RNA–Protein interactions for RNA: ENST00000489892.1

TRIM40-208, Transcript of tripartite motif containing 40, humanhuman

TSL 3

Gene TRIM40, Length 941 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-208ENST00000489892 USP2O75604 605 aaPredicted RBP13.38□□□□□ -0.27
TRIM40-208ENST00000489892 BMP15O95972 392 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 NAPAP54920 295 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 BACE1P56817 501 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 TTLL12Q14166 644 aaPredicted RBP13.38□□□□□ -0.27
TRIM40-208ENST00000489892 ZSCAN23Q3MJ62 389 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 RILPL1Q5EBL4 403 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 KCTD1Q719H9 257 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 HOMER1Q86YM7 354 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 ADGRF4Q8IZF3 695 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 ACER1Q8TDN7 264 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 MTMR8Q96EF0 704 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 AIFM3Q96NN9 605 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 JMJD4Q9H9V9 463 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 VPS54Q9P1Q0 977 aa13.38□□□□□ -0.27
TRIM40-208ENST00000489892 LETM1O95202 739 aaPredicted RBP13.37□□□□□ -0.27
TRIM40-208ENST00000489892 TRAPPC10P48553 1259 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 PPATQ06203 517 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 SHROOM1Q2M3G4 852 aaPredicted RBP13.37□□□□□ -0.27
TRIM40-208ENST00000489892 MYSM1Q5VVJ2 828 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 PRAMEF18Q5VWM3 479 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 CAVIN1Q6NZI2 390 aaKnown RBP13.37□□□□□ -0.27
TRIM40-208ENST00000489892 LRSAM1Q6UWE0 723 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 HHIPL1Q96JK4 782 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 C12orf42Q96LP6 360 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 PIGSQ96S52 555 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 AMNQ9BXJ7 453 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 UBA5Q9GZZ9 404 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 ZMYND12Q9H0C1 365 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 VAT1LQ9HCJ6 419 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 POLR3EQ9NVU0 708 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 TSKSQ9UJT2 592 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 PCDHA4Q9UN74 947 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 CEP131Q9UPN4 1083 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 ZHX2Q9Y6X8 837 aa13.37□□□□□ -0.27
TRIM40-208ENST00000489892 BAZ2BQ9UIF8 2168 aaKnown RBP13.37□□□□□ -0.27
TRIM40-208ENST00000489892 CASP8AP2Q9UKL3 1982 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 GOLGA6L4A6NEF3 574 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 STXBP3O00186 592 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 PRPF40AO75400 957 aaKnown RBP13.36□□□□□ -0.27
TRIM40-208ENST00000489892 YEATS4O95619 227 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 MRPL12P52815 198 aaKnown RBP13.36□□□□□ -0.27
TRIM40-208ENST00000489892 DNM1Q05193 864 aaKnown RBP13.36□□□□□ -0.27
TRIM40-208ENST00000489892 SPP2Q13103 211 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 MTMR2Q13614 643 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 VGLL4Q14135 290 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 CDC37Q16543 378 aaPredicted RBP13.36□□□□□ -0.27
TRIM40-208ENST00000489892 FAM83BQ5T0W9 1011 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 WWC2Q6AWC2 1192 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 ERO1BQ86YB8 467 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 BLIDQ8IZY5 108 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 SPICE1Q8N0Z3 855 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 KCNG4Q8TDN1 519 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 PIBF1Q8WXW3 757 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 ZKSCAN4Q969J2 545 aaPredicted RBP13.36□□□□□ -0.27
TRIM40-208ENST00000489892 SPATA32Q96LK8 384 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 PANK2Q9BZ23 570 aa13.36□□□□□ -0.27
TRIM40-208ENST00000489892 RTN4Q9NQC3 1192 aaKnown RBP13.36□□□□□ -0.27
TRIM40-208ENST00000489892 CTDP1Q9Y5B0 961 aaPredicted RBP13.36□□□□□ -0.27
TRIM40-208ENST00000489892 PAPPA2Q9BXP8 1791 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 CCDC194A0A1B0GVG4 234 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 hCG_1642624A0A1W2PR95 340 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 CXCL11O14625 94 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 FIBPO43427 364 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 ADCY7P51828 1080 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 OTUD7BQ6GQQ9 843 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 KRT25Q7Z3Z0 450 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 GAS2L3Q86XJ1 694 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 FBXO11Q86XK2 927 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 REXO1Q8N1G1 1221 aaKnown RBP13.35□□□□□ -0.27
TRIM40-208ENST00000489892 PRPF38AQ8NAV1 312 aaKnown RBP13.35□□□□□ -0.27
TRIM40-208ENST00000489892 CUL5Q93034 780 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 SLF1Q9BQI6 1058 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 RTEL1Q9NZ71 1219 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 KCNJ14Q9UNX9 436 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 SNCAIPQ9Y6H5 919 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 MYPNQ86TC9 1320 aa13.35□□□□□ -0.27
TRIM40-208ENST00000489892 SMCO2A6NFE2 343 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 SPDYE5A6NIY4 337 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 BTBD18B2RXH4 712 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 DTNBO60941 627 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 VCAM1P19320 739 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 SLC16A2P36021 539 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 HUNKP57058 714 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 UBE2HP62256 183 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 NOGQ13253 232 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 PPIL2Q13356 520 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 ORC2Q13416 577 aaPredicted RBP13.34□□□□□ -0.27
TRIM40-208ENST00000489892 ZYXQ15942 572 aaKnown RBP13.34□□□□□ -0.27
TRIM40-208ENST00000489892 SLC35G1Q2M3R5 365 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 QRICH1Q2TAL8 776 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 SH3D19Q5HYK7 790 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 TTBK2Q6IQ55 1244 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.34□□□□□ -0.27
TRIM40-208ENST00000489892 GPKOWQ92917 476 aaPredicted RBP eCLIP13.34□□□□□ -0.27
TRIM40-208ENST00000489892 TANGO6Q9C0B7 1094 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 MAF1Q9H063 256 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 PRR12Q9ULL5 1215 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 CNPY2Q9Y2B0 182 aa13.34□□□□□ -0.27
TRIM40-208ENST00000489892 AFG3L2Q9Y4W6 797 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms