RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 H2AFB2P0C5Z0 115 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 ZNF853P0CG23 659 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 FMR1Q06787 632 aaKnown RBP eCLIP8.28□□□□□ -1.085e-7■■■■□ 23.1
PRPF40A-210ENST00000489741 KIAA2012Q0VF49 1180 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 AIMP1Q12904 312 aaKnown RBP8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 DDX10Q13206 875 aaKnown RBP8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 ORC1Q13415 861 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 IKBKEQ14164 716 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 SF3B3Q15393 1217 aaKnown RBP8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 GALNT12Q8IXK2 581 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 NIM1KQ8IY84 436 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 SUPT20HQ8NEM7 779 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 PLBD2Q8NHP8 589 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 GPRC5DQ9NZD1 345 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 TRMT112Q9UI30 125 aaKnown RBP8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 ZNRF3Q9ULT6 936 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 SH3TC1Q8TE82 1336 aa8.28□□□□□ -1.08
PRPF40A-210ENST00000489741 LAMB4A4D0S4 1761 aa8.27□□□□□ -1.08
PRPF40A-210ENST00000489741 NUP98P52948 1817 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 GPR182O15218 404 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 DDX3YO15523 660 aaKnown RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 CTCFP49711 727 aaPredicted RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 NLRP12P59046 1061 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 C19orf57Q0VDD7 668 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 GRAPQ13588 217 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 DPP8Q6V1X1 898 aaPredicted RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 DDX46Q7L014 1031 aaKnown RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 TMC4Q7Z404 712 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 CCDC146Q8IYE0 955 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 GRAPLQ8TC17 118 aaPredicted RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 FOXD4L4Q8WXT5 416 aaPredicted RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 OSGEPQ9NPF4 335 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 ADARB2Q9NS39 739 aaKnown RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 CHPF2Q9P2E5 772 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 CACNA1SQ13698 1873 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 DLG5Q8TDM6 1919 aa8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 WDR33Q9C0J8 1336 aaKnown RBP8.27□□□□□ -1.09
PRPF40A-210ENST00000489741 LTBP1Q14766 1721 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 A0A1W2PP55 124 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 YDJCA8MPS7 323 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 METTL12A8MUP2 240 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 ADAM11O75078 769 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 GMPSP49915 693 aaPredicted RBP8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 VN1R5Q7Z5H4 357 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 UBASH3BQ8TF42 649 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 DMRTB1Q96MA1 342 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 NIF3L1Q9GZT8 377 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 TMX4Q9H1E5 349 aaPredicted RBP8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 LIN7BQ9HAP6 207 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 DBF4Q9UBU7 674 aaPredicted RBP8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 CDHR2Q9BYE9 1310 aa8.26□□□□□ -1.09
PRPF40A-210ENST00000489741 TRAF5O00463 557 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 TM4SF5O14894 197 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 HSPA8P11142 646 aaKnown RBP8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 ITGB7P26010 798 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 LBX1P52954 281 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 MAP2K1Q02750 393 aaPredicted RBP8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 TNIP1Q15025 636 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 DUSP27Q5VZP5 1158 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 CIAPIN1Q6FI81 312 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 Q6ZS46 218 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 DZIP1LQ8IYY4 767 aaKnown RBP8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 DPF2Q92785 391 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 FAM89AQ96GI7 184 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 RBCK1Q9BYM8 510 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 CEP41Q9BYV8 373 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 HYPKQ9NX55 129 aa8.25□□□□□ -1.09
PRPF40A-210ENST00000489741 EIF1AYO14602 144 aaKnown RBP8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 RAD17O75943 681 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 MAPK1P28482 360 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 PRSS36Q5K4E3 855 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 KIAA1211Q6ZU35 1233 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 SAPCD2Q86UD0 394 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 CCNJLQ8IV13 435 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 CELF1Q92879 486 aaKnown RBP8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 HHIPL1Q96JK4 782 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 CAPNS2Q96L46 248 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 GPR101Q96P66 508 aaPredicted RBP8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 DNAJC25Q9H1X3 360 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 EHD4Q9H223 541 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 PRKRIP1Q9H875 184 aaPredicted RBP8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 NPHS2Q9NP85 383 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 POLLQ9UGP5 575 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 CNOT7Q9UIV1 285 aaKnown RBP8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 DCTN4Q9UJW0 460 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 ABT1Q9ULW3 272 aaKnown RBP8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 LAS1LQ9Y4W2 734 aaKnown RBP8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 IVNS1ABPQ9Y6Y0 642 aa8.24□□□□□ -1.09
PRPF40A-210ENST00000489741 SHTN1A0MZ66 631 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 SOX1O00570 391 aaPredicted RBP8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 IRS4O14654 1257 aaPredicted RBP8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 MAP2K2P36507 400 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 ECE1P42892 770 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 RPS8P62241 208 aaKnown RBP8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 KCNA1Q09470 495 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 WDR43Q15061 677 aaKnown RBP eCLIP8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 HGSNATQ68CP4 663 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 CYP4F22Q6NT55 531 aa8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 ZBTB38Q8NAP3 1195 aaPredicted RBP8.23□□□□□ -1.09
PRPF40A-210ENST00000489741 ZNF428Q96B54 188 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms