RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 SLC35G1Q2M3R5 365 aa16.06■□□□□ 0.16
C9orf3-221ENST00000489562 FAM43AQ8N2R8 423 aa16.06■□□□□ 0.16
C9orf3-221ENST00000489562 ATG4CQ96DT6 458 aa16.06■□□□□ 0.16
C9orf3-221ENST00000489562 PTPN18Q99952 460 aa16.06■□□□□ 0.16
C9orf3-221ENST00000489562 SLC38A10Q9HBR0 1119 aa16.06■□□□□ 0.16
C9orf3-221ENST00000489562 VAT1LQ9HCJ6 419 aa16.06■□□□□ 0.16
C9orf3-221ENST00000489562 RBBP6Q7Z6E9 1792 aaKnown RBP16.05■□□□□ 0.16
C9orf3-221ENST00000489562 IGF2BP3O00425 579 aaKnown RBP eCLIP16.05■□□□□ 0.16
C9orf3-221ENST00000489562 JAK2O60674 1132 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 SCG2P13521 617 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 GCLCP48506 637 aaPredicted RBP16.05■□□□□ 0.16
C9orf3-221ENST00000489562 VEGFBP49765 207 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 PFKFB3Q16875 520 aaPredicted RBP16.05■□□□□ 0.16
C9orf3-221ENST00000489562 QRICH1Q2TAL8 776 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 SAMD1Q6SPF0 538 aaPredicted RBP16.05■□□□□ 0.16
C9orf3-221ENST00000489562 HOMER1Q86YM7 354 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 FAM184AQ8NB25 1140 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 SMCR8Q8TEV9 937 aaPredicted RBP16.05■□□□□ 0.16
C9orf3-221ENST00000489562 PIGSQ96S52 555 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 P2RX7Q99572 595 aaKnown RBP16.05■□□□□ 0.16
C9orf3-221ENST00000489562 SMCHD1A6NHR9 2005 aa16.05■□□□□ 0.16
C9orf3-221ENST00000489562 ATP2A1O14983 1001 aa16.04■□□□□ 0.16
C9orf3-221ENST00000489562 AOC2O75106 756 aa16.04■□□□□ 0.16
C9orf3-221ENST00000489562 XBP1P17861 261 aa16.04■□□□□ 0.16
C9orf3-221ENST00000489562 TAF1CQ15572 869 aaPredicted RBP16.04■□□□□ 0.16
C9orf3-221ENST00000489562 RGS22Q8NE09 1264 aa16.04■□□□□ 0.16
C9orf3-221ENST00000489562 DDX11Q96FC9 970 aa16.04■□□□□ 0.16
C9orf3-221ENST00000489562 IPO9Q96P70 1041 aaKnown RBP16.04■□□□□ 0.16
C9orf3-221ENST00000489562 AMNQ9BXJ7 453 aa16.04■□□□□ 0.16
C9orf3-221ENST00000489562 CWC22Q9HCG8 908 aaKnown RBP16.04■□□□□ 0.16
C9orf3-221ENST00000489562 RABGAP1Q9Y3P9 1069 aa16.04■□□□□ 0.16
C9orf3-221ENST00000489562 ICAM1P05362 532 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 PDIA4P13667 645 aaKnown RBP16.03■□□□□ 0.16
C9orf3-221ENST00000489562 FDPSP14324 419 aaKnown RBP16.03■□□□□ 0.16
C9orf3-221ENST00000489562 PDCP20941 246 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 GJB2P29033 226 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 PKN1Q16512 942 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 PPP1R18Q6NYC8 613 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 FBXO11Q86XK2 927 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 REPS2Q8NFH8 660 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 CCDC12Q8WUD4 166 aaPredicted RBP16.03■□□□□ 0.16
C9orf3-221ENST00000489562 PIBF1Q8WXW3 757 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 SH3GLB2Q9NR46 395 aa16.03■□□□□ 0.16
C9orf3-221ENST00000489562 CYP2C8P10632 490 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 COPB2P35606 906 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 HTRA3P83110 453 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 CCDC174Q6PII3 467 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 TEX2Q8IWB9 1127 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 CCDC148Q8NFR7 591 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 ZIC5Q96T25 663 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 ALG1Q9BT22 464 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 TEX13BQ9BXU2 312 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 ZFYVE28Q9HCC9 887 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 BARHL2Q9NY43 387 aa16.02■□□□□ 0.16
C9orf3-221ENST00000489562 ZNF214Q9UL59 606 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-221ENST00000489562 ZNF536O15090 1300 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 ABCB11O95342 1321 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 hCG_1642624A0A1W2PR95 340 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 CA12O43570 354 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 PPFIA3O75145 1194 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 TRIM29Q14134 588 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 TKFCQ3LXA3 575 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 HEATR3Q7Z4Q2 680 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 GLT8D2Q9H1C3 349 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 FOXD4L1Q9NU39 408 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 CCPG1Q9ULG6 757 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 PCDHA1Q9Y5I3 950 aa16.01■□□□□ 0.15
C9orf3-221ENST00000489562 ADGRA2Q96PE1 1338 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 ESYT2A0FGR8 921 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 PPP1R11O60927 126 aaPredicted RBP16■□□□□ 0.15
C9orf3-221ENST00000489562 SLC25A27O95847 323 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 STAT3P40763 770 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 SNAP25P60880 206 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 CCNA1P78396 465 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 TMEM132BQ14DG7 1078 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 FAM110CQ1W6H9 321 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 WWC2Q6AWC2 1192 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 SNRNP48Q6IEG0 339 aaKnown RBP16■□□□□ 0.15
C9orf3-221ENST00000489562 CPXCR1Q8N123 301 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 C8orf76Q96K31 380 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 PAGR1Q9BTK6 254 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 MAF1Q9H063 256 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 SPATC1LQ9H0A9 340 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 RAVER2Q9HCJ3 691 aaKnown RBP16■□□□□ 0.15
C9orf3-221ENST00000489562 RBPJLQ9UBG7 517 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 MORF4L1Q9UBU8 362 aa16■□□□□ 0.15
C9orf3-221ENST00000489562 MRPL11Q9Y3B7 192 aaKnown RBP16■□□□□ 0.15
C9orf3-221ENST00000489562 STXBP3O00186 592 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 TLR2O60603 784 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 CALML3P27482 149 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 SLC4A3P48751 1232 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 NAPAP54920 295 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 ERVK-9P63128 1117 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 ERVK-24P63145 666 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 PLS1Q14651 629 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 LARP1BQ659C4 914 aaKnown RBP15.99■□□□□ 0.15
C9orf3-221ENST00000489562 GALNT17Q6IS24 598 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 RIOX2Q8IUF8 465 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 SPRYD3Q8NCJ5 442 aa15.99■□□□□ 0.15
C9orf3-221ENST00000489562 SHCBP1Q8NEM2 672 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms