RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ZMYND15Q9H091 742 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 DNAJC25Q9H1X3 360 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 GPCPD1Q9NPB8 672 aa13.9□□□□□ -0.18
HDAC6-230ENST00000488543 POTECB2RU33 542 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 CUTAO60888 179 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 KCTD1Q719H9 257 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 JMYQ8N9B5 988 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 CLIC6Q96NY7 704 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 BRMS1Q9HCU9 246 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 NYAP2Q9P242 653 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 FBXO2Q9UK22 296 aaPredicted RBP13.89□□□□□ -0.19
HDAC6-230ENST00000488543 ZBTB21Q9ULJ3 1066 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 HPSEQ9Y251 543 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 MORC2Q9Y6X9 1032 aaPredicted RBP13.89□□□□□ -0.19
HDAC6-230ENST00000488543 M0R2N6 131 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 PFKFB1P16118 471 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 INPP5BP32019 993 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 RESP18Q5W5W9 173 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 SPICE1Q8N0Z3 855 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 RIOX1Q9H6W3 641 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 BARHL2Q9NY43 387 aa13.89□□□□□ -0.19
HDAC6-230ENST00000488543 ADM5C9JUS6 153 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 DYNC1I1O14576 645 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 KINO60870 393 aaKnown RBP13.88□□□□□ -0.19
HDAC6-230ENST00000488543 CALML3P27482 149 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 SLC16A2P36021 539 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 ASPRV1Q53RT3 343 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 APOBEC3FQ8IUX4 373 aaKnown RBP13.88□□□□□ -0.19
HDAC6-230ENST00000488543 FAM200AQ8TCP9 573 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 MKL1Q969V6 931 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 L3MBTL3Q96JM7 780 aaPredicted RBP13.88□□□□□ -0.19
HDAC6-230ENST00000488543 NUP88Q99567 741 aaPredicted RBP13.88□□□□□ -0.19
HDAC6-230ENST00000488543 F5H6K3 240 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 CTAGE5O15320 804 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 ATP2B1P20020 1258 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 PTPREP23469 700 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 EPHX2P34913 555 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 GRIN1Q05586 938 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 KLRC3Q07444 240 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 ZNF543Q08ER8 600 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 ZYXQ15942 572 aaKnown RBP13.88□□□□□ -0.19
HDAC6-230ENST00000488543 KIAA1755Q5JYT7 1200 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 BLIDQ8IZY5 108 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 ZNF710Q8N1W2 664 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 KRI1Q8N9T8 703 aaKnown RBP13.88□□□□□ -0.19
HDAC6-230ENST00000488543 DAGLBQ8NCG7 672 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 MYRIPQ8NFW9 859 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 ZKSCAN4Q969J2 545 aaPredicted RBP13.88□□□□□ -0.19
HDAC6-230ENST00000488543 PCDHA4Q9UN74 947 aa13.88□□□□□ -0.19
HDAC6-230ENST00000488543 TRIM75PA6NK02 468 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 EAPPQ56P03 285 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-230ENST00000488543 HEATR3Q7Z4Q2 680 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 HOMER1Q86YM7 354 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 DRC7Q8IY82 874 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 FAM177A1Q8N128 213 aaPredicted RBP13.87□□□□□ -0.19
HDAC6-230ENST00000488543 PIGSQ96S52 555 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 POTEIP0CG38 1075 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 POTEJP0CG39 1038 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 SLFN13Q68D06 897 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 CCDC186Q7Z3E2 898 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 KIAA1524Q8TCG1 905 aa13.87□□□□□ -0.19
HDAC6-230ENST00000488543 DCPSQ96C86 337 aaKnown RBP13.87□□□□□ -0.19
HDAC6-230ENST00000488543 ZNF202O95125 648 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 DGKZQ13574 1117 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 CCDC96Q2M329 555 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 PPP4R3BQ5MIZ7 849 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 PIK3AP1Q6ZUJ8 805 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 CCDC148Q8NFR7 591 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 RRP36Q96EU6 259 aaKnown RBP13.86□□□□□ -0.19
HDAC6-230ENST00000488543 CEP131Q9UPN4 1083 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 SRPRBQ9Y5M8 271 aaKnown RBP13.86□□□□□ -0.19
HDAC6-230ENST00000488543 NDUFB10O96000 172 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 SLC1A4P43007 532 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 TTC38Q5R3I4 469 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 KRT26Q7Z3Y9 468 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 RASGRP4Q8TDF6 673 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 TAF1DQ9H5J8 278 aaPredicted RBP13.86□□□□□ -0.19
HDAC6-230ENST00000488543 PRDM10Q9NQV6 1147 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 SPTLC3Q9NUV7 552 aa13.86□□□□□ -0.19
HDAC6-230ENST00000488543 GALNT17Q6IS24 598 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 C11orf57Q6ZUT1 292 aaPredicted RBP13.85□□□□□ -0.19
HDAC6-230ENST00000488543 WRNIP1Q96S55 665 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 TRIM5Q9C035 493 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 ZMYND12Q9H0C1 365 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 PCDHA6Q9UN73 950 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 PCDHA8Q9Y5H6 950 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 ASNSP08243 561 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 TRAPPC10P48553 1259 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 ARID5BQ14865 1188 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 ZNF174Q15697 407 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 SULF1Q8IWU6 871 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 ZNF579Q8NAF0 562 aaKnown RBP13.85□□□□□ -0.19
HDAC6-230ENST00000488543 TIGD1Q96MW7 591 aa13.85□□□□□ -0.19
HDAC6-230ENST00000488543 SYKP43405 635 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 SNAP25P60880 206 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 SPECC1Q5M775 1068 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 ADGRF4Q8IZF3 695 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 JMJD4Q9H9V9 463 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 SSC5DA1L4H1 1573 aa13.84□□□□□ -0.19
HDAC6-230ENST00000488543 USP17L10C9JJH3 530 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms