RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 NSMFQ6X4W1 530 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 CBLL1Q75N03 491 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 THNSL2Q86YJ6 484 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 ZNF513Q8N8E2 541 aaPredicted RBP5.55□□□□□ -1.52
PTCD3-216ENST00000487043 DNAJB8Q8NHS0 232 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 CHAC2Q8WUX2 184 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 GP6Q9HCN6 339 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 WHRNQ9P202 907 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 FBXL21Q9UKT6 434 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 AKT3Q9Y243 479 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 WRNQ14191 1432 aaPredicted RBP eCLIP5.55□□□□□ -1.52
PTCD3-216ENST00000487043 ABCC8Q09428 1581 aa5.55□□□□□ -1.52
PTCD3-216ENST00000487043 FANCD2Q9BXW9 1451 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 PDE8AO60658 829 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 NFICP08651 508 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 ITGA4P13612 1032 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 JUNBP17275 347 aaPredicted RBP5.54□□□□□ -1.52
PTCD3-216ENST00000487043 EVA1CP58658 441 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 RNF4P78317 190 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 JAG1P78504 1218 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 PLEKHG6Q3KR16 790 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 FNDC3BQ53EP0 1204 aaKnown RBP5.54□□□□□ -1.52
PTCD3-216ENST00000487043 ANKRD39Q53RE8 183 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 CT47A1Q5JQC4 288 aaPredicted RBP5.54□□□□□ -1.52
PTCD3-216ENST00000487043 NOL9Q5SY16 702 aaKnown RBP5.54□□□□□ -1.52
PTCD3-216ENST00000487043 LCE1DQ5T752 114 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 CNNM4Q6P4Q7 775 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 NFXL1Q6ZNB6 911 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 JAMLQ86YT9 394 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 UBR7Q8N806 425 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 STAG1Q8WVM7 1258 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 EZH1Q92800 747 aaPredicted RBP5.54□□□□□ -1.52
PTCD3-216ENST00000487043 BRF1Q92994 677 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 VWCEQ96DN2 955 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 FAM126AQ9BYI3 521 aaPredicted RBP5.54□□□□□ -1.52
PTCD3-216ENST00000487043 ACSS3Q9H6R3 686 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 PDS5BQ9NTI5 1447 aa5.54□□□□□ -1.52
PTCD3-216ENST00000487043 A0A087X0B3 334 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 RBAK-RBAKDNI3L0D1 243 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 SHOXO15266 292 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 SLITRK5O94991 958 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 KCNH1O95259 989 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 C8AP07357 584 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 FGFR1P11362 822 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 ITGB5P18084 799 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 SDSP20132 328 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 SUMO1P63165 101 aaKnown RBP5.53□□□□□ -1.52
PTCD3-216ENST00000487043 CYP27A1Q02318 531 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 PPP2R5DQ14738 602 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 POU5F2Q8N7G0 328 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 BTN2A2Q8WVV5 523 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 OSBP2Q969R2 916 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 MRGPRX3Q96LB0 322 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 IER2Q9BTL4 223 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 CAAP1Q9H8G2 361 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 ZC3H7BQ9UGR2 993 aaKnown RBP5.53□□□□□ -1.52
PTCD3-216ENST00000487043 EMC9Q9Y3B6 208 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 PCDHB12Q9Y5F1 795 aa5.53□□□□□ -1.52
PTCD3-216ENST00000487043 S100BP04271 92 aaPredicted RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 PDGFRBP09619 1106 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 SOX5P35711 763 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 STAT3P40763 770 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 ETV3P41162 512 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 ZNF445P59923 1031 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 NFKB2Q00653 900 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 POMZP3Q6PJE2 187 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 NOL8Q76FK4 1167 aaKnown RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 ZNF765Q7L2R6 523 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 TRIM59Q8IWR1 403 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 CRACR2BQ8N4Y2 399 aaPredicted RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 PRPF38AQ8NAV1 312 aaKnown RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 RNF141Q8WVD5 230 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 GATA6Q92908 595 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 RCC1LQ96I51 464 aaKnown RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 MRPL4Q9BYD3 311 aaKnown RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 IRF2BPLQ9H1B7 796 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 SEMA6CQ9H3T2 930 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 NOL6Q9H6R4 1146 aaKnown RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 PAK6Q9NQU5 681 aaPredicted RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 PRDM10Q9NQV6 1147 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 HOMER2Q9NSB8 354 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 CGGBP1Q9UFW8 167 aaPredicted RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 NDOR1Q9UHB4 597 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 G3BP2Q9UN86 482 aaKnown RBP5.52□□□□□ -1.53
PTCD3-216ENST00000487043 ATP8A1Q9Y2Q0 1164 aa5.52□□□□□ -1.53
PTCD3-216ENST00000487043 DNAJC25-GNG10A0A024R161 153 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 BLACEA4D250 179 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 DYNC1LI2O43237 492 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-216ENST00000487043 LRRN2O75325 713 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 KCNJ6P48051 423 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 CDKN1CP49918 316 aaPredicted RBP5.51□□□□□ -1.53
PTCD3-216ENST00000487043 CDK5R2Q13319 367 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 SNW1Q13573 536 aaKnown RBP5.51□□□□□ -1.53
PTCD3-216ENST00000487043 PLCL1Q15111 1095 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 SF1Q15637 639 aaKnown RBP5.51□□□□□ -1.53
PTCD3-216ENST00000487043 NBPF9Q3BBW0 867 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 GTF2IRD2BQ6EKJ0 949 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 GTF2IRD2Q86UP8 949 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 FERMT3Q86UX7 667 aa5.51□□□□□ -1.53
PTCD3-216ENST00000487043 LRRTM3Q86VH5 581 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms