RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 TCEAL1Q15170 157 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 HSF5Q4G112 596 aaPredicted RBP6.51□□□□□ -1.37
VPS41-213ENST00000485955 CWF19L1Q69YN2 538 aaKnown RBP6.51□□□□□ -1.37
VPS41-213ENST00000485955 HEATR6Q6AI08 1181 aaKnown RBP6.51□□□□□ -1.37
VPS41-213ENST00000485955 SLCO6A1Q86UG4 719 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 IRF2BP1Q8IU81 584 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 CILP2Q8IUL8 1156 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 BHLHE22Q8NFJ8 381 aaPredicted RBP6.51□□□□□ -1.37
VPS41-213ENST00000485955 FGD4Q96M96 766 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 ZDHHC15Q96MV8 337 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 MCMBPQ9BTE3 642 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 SLC6A17Q9H1V8 727 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 PODXL2Q9NZ53 605 aa6.51□□□□□ -1.37
VPS41-213ENST00000485955 ARID1BQ8NFD5 2236 aaPredicted RBP6.5□□□□□ -1.37
VPS41-213ENST00000485955 A0A087WZG4 1122 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 MYOCOSA0A1B0GUC4 107 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 ETV2O00321 342 aaPredicted RBP6.5□□□□□ -1.37
VPS41-213ENST00000485955 PDE6BP35913 854 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 JAG1P78504 1218 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 PKN1Q16512 942 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 KIAA1211LQ6NV74 962 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 ZNF605Q86T29 641 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 JMJD8Q96S16 334 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 ZNF552Q9H707 407 aaPredicted RBP6.5□□□□□ -1.37
VPS41-213ENST00000485955 WHRNQ9P202 907 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 STRIP2Q9ULQ0 834 aa6.5□□□□□ -1.37
VPS41-213ENST00000485955 DIS3Q9Y2L1 958 aaKnown RBP6.5□□□□□ -1.37
VPS41-213ENST00000485955 DBX1A6NMT0 343 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 VAMP4O75379 141 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 TSPAN15O95858 294 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 IFNGR1P15260 489 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 RAP1GAPP47736 663 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 FZD5Q13467 585 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 ADGRF1Q5T601 910 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 VHLLQ6RSH7 139 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 ADAT2Q7Z6V5 191 aaKnown RBP6.49□□□□□ -1.37
VPS41-213ENST00000485955 ZNF513Q8N8E2 541 aaPredicted RBP6.49□□□□□ -1.37
VPS41-213ENST00000485955 KCNN1Q92952 543 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 MCOLN1Q9GZU1 580 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 CRTAC1Q9NQ79 661 aa6.49□□□□□ -1.37
VPS41-213ENST00000485955 SF3B6Q9Y3B4 125 aaKnown RBP6.49□□□□□ -1.37
VPS41-213ENST00000485955 A0A1W2PQ45 241 aaPredicted RBP6.48□□□□□ -1.37
VPS41-213ENST00000485955 A0A1W2PQY0 241 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 WTIPA6NIX2 430 aaPredicted RBP6.48□□□□□ -1.37
VPS41-213ENST00000485955 SMAD7O15105 426 aaKnown RBP6.48□□□□□ -1.37
VPS41-213ENST00000485955 FGF10O15520 208 aaPredicted RBP6.48□□□□□ -1.37
VPS41-213ENST00000485955 CD3EP07766 207 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 PNLIPP16233 465 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 PRKCAP17252 672 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 ENDOUP21128 410 aaKnown RBP6.48□□□□□ -1.37
VPS41-213ENST00000485955 ETFBP38117 255 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 NOP2P46087 812 aaKnown RBP6.48□□□□□ -1.37
VPS41-213ENST00000485955 GALNT18Q6P9A2 607 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 TINF2Q9BSI4 451 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 IGSF5Q9NSI5 407 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 APEX2Q9UBZ4 518 aa6.48□□□□□ -1.37
VPS41-213ENST00000485955 TMEM253P0C7T8 217 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 MSL3P1P0C860 447 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 POU4F1Q01851 419 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 ATG14Q6ZNE5 492 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 VPS37DQ86XT2 251 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 ARHGEF39Q8N4T4 335 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 SLC26A8Q96RN1 970 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 PPP1R16BQ96T49 567 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 SGPP1Q9BX95 441 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 GBP3Q9H0R5 595 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 IMPACTQ9P2X3 320 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 ACSL6Q9UKU0 697 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 TAF6LQ9Y6J9 622 aa6.47□□□□□ -1.37
VPS41-213ENST00000485955 OR14I1A6ND48 311 aa6.46□□□□□ -1.38
VPS41-213ENST00000485955 NFIBO00712 420 aa6.46□□□□□ -1.38
VPS41-213ENST00000485955 PPM1BO75688 479 aa6.46□□□□□ -1.38
VPS41-213ENST00000485955 DPY19L1Q2PZI1 675 aa6.46□□□□□ -1.38
VPS41-213ENST00000485955 NAT16Q8N8M0 369 aa6.46□□□□□ -1.38
VPS41-213ENST00000485955 PTCHD1Q96NR3 888 aa6.46□□□□□ -1.38
VPS41-213ENST00000485955 CGGBP1Q9UFW8 167 aaPredicted RBP6.46□□□□□ -1.38
VPS41-213ENST00000485955 ANKRD34BA5PLL1 514 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 AURKAO14965 403 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 PEX10O60683 326 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 SSBP05455 408 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS41-213ENST00000485955 FGRP09769 529 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 MED14OSP0DP75 135 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 CFPP27918 469 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 ERVFRD-1P60508 538 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 DLG4P78352 724 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 CYP4F8P98187 520 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 MVKQ03426 396 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 HLA-DQA1Q5Y7H0 255 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 MCF2L2Q86YR7 1114 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 NUP43Q8NFH3 380 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 MICAL1Q8TDZ2 1067 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 RCC1LQ96I51 464 aaKnown RBP6.45□□□□□ -1.38
VPS41-213ENST00000485955 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS41-213ENST00000485955 LGR4Q9BXB1 951 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 GCM1Q9NP62 436 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 CD320Q9NPF0 282 aa6.45□□□□□ -1.38
VPS41-213ENST00000485955 SMG5Q9UPR3 1016 aaKnown RBP6.45□□□□□ -1.38
VPS41-213ENST00000485955 STXBP3O00186 592 aa6.44□□□□□ -1.38
VPS41-213ENST00000485955 GLDCP23378 1020 aa6.44□□□□□ -1.38
VPS41-213ENST00000485955 GNL2Q13823 731 aaKnown RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms