RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 CDKL5O76039 1030 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 SEC24BO95487 1268 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 FCER1AP12319 257 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 MCM2P49736 904 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 RBM25P49756 843 aaKnown RBP9.6□□□□□ -0.87
SF3A1-208ENST00000485618 NEK4P51957 841 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 AKAP17AQ02040 695 aaKnown RBP9.6□□□□□ -0.87
SF3A1-208ENST00000485618 TROAPQ12815 778 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 RABEP1Q15276 862 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 MTFR1Q15390 333 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 RTN1Q16799 776 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 WDR78Q5VTH9 848 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 PLEKHH3Q7Z736 793 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 NCAPG2Q86XI2 1143 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 TRMT44Q8IYL2 757 aaKnown RBP9.6□□□□□ -0.87
SF3A1-208ENST00000485618 CPXCR1Q8N123 301 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 CHST13Q8NET6 341 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 SOCS4Q8WXH5 440 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 BRF1Q92994 677 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 SHISA4Q96DD7 197 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 ATG4CQ96DT6 458 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 IL17RAQ96F46 866 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 ZNF274Q96GC6 653 aaPredicted RBP9.6□□□□□ -0.87
SF3A1-208ENST00000485618 TRIM47Q96LD4 638 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 LRRC2Q9BYS8 371 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 MAF1Q9H063 256 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 FBXO28Q9NVF7 368 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 SRRDQ9UH36 339 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 PTPRFP10586 1907 aa9.6□□□□□ -0.87
SF3A1-208ENST00000485618 CPLX1O14810 134 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 GOLGA8HP0CJ92 632 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 CTGFP29279 349 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 GRK4P32298 578 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 SLC16A2P36021 539 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 SLC4A3P48751 1232 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 METAP2P50579 478 aaKnown RBP eCLIP9.59□□□□□ -0.873e-6■■■■□ 25.7
SF3A1-208ENST00000485618 KCTD2Q14681 263 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 TMEM132BQ14DG7 1078 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 SNRNP48Q6IEG0 339 aaKnown RBP9.59□□□□□ -0.87
SF3A1-208ENST00000485618 APOA5Q6Q788 366 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 CHRDL2Q6WN34 429 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 MICU3Q86XE3 530 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 MCF2L2Q86YR7 1114 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 RIOX2Q8IUF8 465 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 TRIM22Q8IYM9 498 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 ABRAQ8N0Z2 381 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 RRP36Q96EU6 259 aaKnown RBP9.59□□□□□ -0.87
SF3A1-208ENST00000485618 MPHOSPH6Q99547 160 aaKnown RBP9.59□□□□□ -0.87
SF3A1-208ENST00000485618 NUDT12Q9BQG2 462 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 UPF3BQ9BZI7 483 aaKnown RBP9.59□□□□□ -0.87
SF3A1-208ENST00000485618 RANBP17Q9H2T7 1088 aaKnown RBP9.59□□□□□ -0.87
SF3A1-208ENST00000485618 VAT1LQ9HCJ6 419 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 BIN2Q9UBW5 565 aaPredicted RBP9.59□□□□□ -0.87
SF3A1-208ENST00000485618 CCPG1Q9ULG6 757 aa9.59□□□□□ -0.87
SF3A1-208ENST00000485618 ADGRA2Q96PE1 1338 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 SLC15A5A6NIM6 579 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 GOLGA8AA7E2F4 631 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 GOLGA8BA8MQT2 603 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 B4DLN1 442 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 ICAM1P05362 532 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 RGS2P41220 211 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 MRPL12P52815 198 aaKnown RBP9.58□□□□□ -0.88
SF3A1-208ENST00000485618 EVCP57679 992 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 PRKCZQ05513 592 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 TTBK2Q6IQ55 1244 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 CCDC174Q6PII3 467 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 DPP9Q86TI2 863 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 FBXO11Q86XK2 927 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 TEX2Q8IWB9 1127 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 ADGRF4Q8IZF3 695 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 ANKRD35Q8N283 1001 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 SAMD3Q8N6K7 520 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 NKX2-3Q8TAU0 364 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 DPF3Q92784 378 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 DDX11Q96FC9 970 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 ZSCAN31Q96LW9 406 aaPredicted RBP9.58□□□□□ -0.88
SF3A1-208ENST00000485618 TCEANC2Q96MN5 208 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 MMP19Q99542 508 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 SPZ1Q9BXG8 430 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 AMNQ9BXJ7 453 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 MOV10L1Q9BXT6 1211 aaKnown RBP9.58□□□□□ -0.88
SF3A1-208ENST00000485618 AGXT2Q9BYV1 514 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 UBA5Q9GZZ9 404 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 SLKQ9H2G2 1235 aaPredicted RBP9.58□□□□□ -0.88
SF3A1-208ENST00000485618 BTBD7Q9P203 1132 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 MAD2L2Q9UI95 211 aa9.58□□□□□ -0.88
SF3A1-208ENST00000485618 MRPL11Q9Y3B7 192 aaKnown RBP9.58□□□□□ -0.88
SF3A1-208ENST00000485618 PFASO15067 1338 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 ABCB11O95342 1321 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 PNMA6FA0A0J9YX94 578 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 ZBTB5O15062 677 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 XRCC5P13010 732 aaKnown RBP9.57□□□□□ -0.88
SF3A1-208ENST00000485618 CCL5P13501 91 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 CPA1P15085 419 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 ERCC3P19447 782 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 UBXN2AP68543 259 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 APOBRQ0VD83 1088 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 CDC37Q16543 378 aaPredicted RBP9.57□□□□□ -0.88
SF3A1-208ENST00000485618 Q3C1V9 767 aa9.57□□□□□ -0.88
SF3A1-208ENST00000485618 GPR142Q7Z601 462 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms