RNA–Protein interactions for RNA: ENST00000485275.2

LRIF1-202, Transcript of ligand dependent nuclear receptor interacting factor 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LRIF1, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1-202ENST00000485275 CHURC1Q8WUH1 139 aa16.74■□□□□ 0.27
LRIF1-202ENST00000485275 ZMYND12Q9H0C1 365 aa16.74■□□□□ 0.27
LRIF1-202ENST00000485275 ZSCAN16Q9H4T2 348 aaPredicted RBP16.74■□□□□ 0.27
LRIF1-202ENST00000485275 GDPD2Q9HCC8 539 aa16.74■□□□□ 0.27
LRIF1-202ENST00000485275 PPP1R9AQ9ULJ8 1098 aa16.74■□□□□ 0.27
LRIF1-202ENST00000485275 OPLAHO14841 1288 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 XBP1P17861 261 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 KRT2P35908 639 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 CCDC174Q6PII3 467 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 C2orf69Q8N8R5 385 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 ATG4CQ96DT6 458 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 FOXP1Q9H334 677 aaPredicted RBP16.73■□□□□ 0.27
LRIF1-202ENST00000485275 TMOD4Q9NZQ9 345 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 PCDHA4Q9UN74 947 aa16.73■□□□□ 0.27
LRIF1-202ENST00000485275 UNCXA6NJT0 531 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 hCG_1984214I3L0E3 225 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 WNT7AO00755 349 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 CXCL11O14625 94 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 USH1GQ495M9 461 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 MYSM1Q5VVJ2 828 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 CATSPERGQ6ZRH7 1159 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 NOSTRINQ8IVI9 506 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 ZNF713Q8N859 430 aaPredicted RBP16.72■□□□□ 0.27
LRIF1-202ENST00000485275 DAGLBQ8NCG7 672 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 CCDC148Q8NFR7 591 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 SLC10A4Q96EP9 437 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 ESYT2A0FGR8 921 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 SMCO2A6NFE2 343 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 MKRN3Q13064 507 aaKnown RBP16.72■□□□□ 0.27
LRIF1-202ENST00000485275 BRAPQ7Z569 592 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 BLIDQ8IZY5 108 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 PRPF38AQ8NAV1 312 aaKnown RBP16.72■□□□□ 0.27
LRIF1-202ENST00000485275 REPS2Q8NFH8 660 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 USP28Q96RU2 1077 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 SLC38A10Q9HBR0 1119 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 PCDHA1Q9Y5I3 950 aa16.72■□□□□ 0.27
LRIF1-202ENST00000485275 MCM4P33991 863 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 TOB1P50616 345 aaPredicted RBP16.71■□□□□ 0.27
LRIF1-202ENST00000485275 NBR1Q14596 966 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 GPAT2Q6NUI2 795 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 PPP1R18Q6NYC8 613 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 GADL1Q6ZQY3 521 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 FBXO11Q86XK2 927 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 PROCA1Q8NCQ7 364 aaPredicted RBP16.71■□□□□ 0.27
LRIF1-202ENST00000485275 MS4A4AQ96JQ5 239 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 AMNQ9BXJ7 453 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 TFIP11Q9UBB9 837 aaKnown RBP16.71■□□□□ 0.27
LRIF1-202ENST00000485275 PCDHA6Q9UN73 950 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 PCDHA8Q9Y5H6 950 aa16.71■□□□□ 0.27
LRIF1-202ENST00000485275 RBBP6Q7Z6E9 1792 aaKnown RBP16.71■□□□□ 0.27
LRIF1-202ENST00000485275 SPDYE16A6NNV3 312 aaPredicted RBP16.7■□□□□ 0.26
LRIF1-202ENST00000485275 VWA5AO00534 786 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 FIBPO43427 364 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 PEX10O60683 326 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 HUNKP57058 714 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 SAFBQ15424 915 aaKnown RBP eCLIP16.7■□□□□ 0.262e-6■□□□□ 8.5
LRIF1-202ENST00000485275 AGBL1Q96MI9 1066 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 GBP4Q96PP9 640 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 P2RX7Q99572 595 aaKnown RBP16.7■□□□□ 0.26
LRIF1-202ENST00000485275 TMEM260Q9NX78 707 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 ADAMTS5Q9UNA0 930 aa16.7■□□□□ 0.26
LRIF1-202ENST00000485275 CALML3P27482 149 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 DSG3P32926 999 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 UBE2SQ16763 222 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 SAPCD2Q86UD0 394 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 FAM177A1Q8N128 213 aaPredicted RBP16.69■□□□□ 0.26
LRIF1-202ENST00000485275 SMC1BQ8NDV3 1235 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 ATP6V1DQ9Y5K8 247 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L15C9J2P7 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L13C9JLJ4 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L11C9JVI0 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L18D6R9N7 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L22D6RA61 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L17D6RBQ6 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L19D6RCP7 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L20D6RJB6 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 CLK2P49760 499 aaKnown RBP16.69■□□□□ 0.26
LRIF1-202ENST00000485275 USP17L24Q0WX57 530 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 GNL2Q13823 731 aaKnown RBP16.69■□□□□ 0.26
LRIF1-202ENST00000485275 ZNF784Q8NCA9 323 aaPredicted RBP16.69■□□□□ 0.26
LRIF1-202ENST00000485275 CCDC12Q8WUD4 166 aaPredicted RBP16.69■□□□□ 0.26
LRIF1-202ENST00000485275 PGBD1Q96JS3 809 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 RAVER2Q9HCJ3 691 aaKnown RBP16.69■□□□□ 0.26
LRIF1-202ENST00000485275 RIC8AQ9NPQ8 531 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 AGTPBP1Q9UPW5 1226 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 CLIC4Q9Y696 253 aa16.69■□□□□ 0.26
LRIF1-202ENST00000485275 ICAM1P05362 532 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 NCLP19338 710 aaKnown RBP16.68■□□□□ 0.26
LRIF1-202ENST00000485275 HOXA7P31268 230 aaPredicted RBP16.68■□□□□ 0.26
LRIF1-202ENST00000485275 ADCY7P51828 1080 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 CEBPZQ03701 1054 aaKnown RBP16.68■□□□□ 0.26
LRIF1-202ENST00000485275 SNAPC2Q13487 334 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 COG2Q14746 738 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 SPRYD7Q5W111 196 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 PIK3AP1Q6ZUJ8 805 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 RASAL3Q86YV0 1011 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 C6orf50Q9HD87 102 aa16.68■□□□□ 0.26
LRIF1-202ENST00000485275 ZNF214Q9UL59 606 aaPredicted RBP16.68■□□□□ 0.26
LRIF1-202ENST00000485275 MEIS2O14770 477 aa16.67■□□□□ 0.26
LRIF1-202ENST00000485275 KRT85P78386 507 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms