RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 ZNF445P59923 1031 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 DLG4P78352 724 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 NFKB2Q00653 900 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 CHRNEQ04844 493 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 CEP128Q6ZU80 1094 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 NLRX1Q86UT6 975 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 MARCH10Q8NA82 808 aaPredicted RBP5.54□□□□□ -1.52
VPS50-216ENST00000484954 SYTL4Q96C24 671 aaPredicted RBP5.54□□□□□ -1.52
VPS50-216ENST00000484954 INTS4Q96HW7 963 aaKnown RBP5.54□□□□□ -1.52
VPS50-216ENST00000484954 MCOLN1Q9GZU1 580 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 AP5S1Q9NUS5 200 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 ERVK13-1Q9NX77 482 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 ZNF214Q9UL59 606 aaPredicted RBP5.54□□□□□ -1.52
VPS50-216ENST00000484954 CNOT6Q9ULM6 557 aaKnown RBP5.54□□□□□ -1.52
VPS50-216ENST00000484954 PCDHB10Q9UN67 800 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 ZNF451Q9Y4E5 1061 aa5.54□□□□□ -1.52
VPS50-216ENST00000484954 MYOCOSA0A1B0GUC4 107 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 H0Y8X5 98 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 CBFA2T2O43439 604 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 VAV1P15498 845 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 SDHBP21912 280 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 BMP8BP34820 402 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 GIPRP48546 466 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 EIF6P56537 245 aaKnown RBP5.53□□□□□ -1.52
VPS50-216ENST00000484954 RTP2Q5QGT7 225 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 ZNF605Q86T29 641 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 SPPL2CQ8IUH8 684 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 FAM169BQ8N8A8 192 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 TMEM52Q8NDY8 209 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 SHDQ96IW2 340 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 GP6Q9HCN6 339 aa5.53□□□□□ -1.52
VPS50-216ENST00000484954 GPR55Q9Y2T6 319 aaPredicted RBP5.53□□□□□ -1.52
VPS50-216ENST00000484954 A0A1W2PQH9 124 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 FADS2P1A8MWK0 482 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 COL9A2Q14055 689 aaPredicted RBP5.52□□□□□ -1.53
VPS50-216ENST00000484954 TCERG1LQ5VWI1 586 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 FCRL2Q96LA5 508 aaPredicted RBP5.52□□□□□ -1.53
VPS50-216ENST00000484954 DSCC1Q9BVC3 393 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 CDADC1Q9BWV3 514 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 SGPP1Q9BX95 441 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 SLC12A9Q9BXP2 914 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 SRRTQ9BXP5 876 aaKnown RBP5.52□□□□□ -1.53
VPS50-216ENST00000484954 RTEL1Q9NZ71 1219 aa5.52□□□□□ -1.53
VPS50-216ENST00000484954 NRDCO43847 1150 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 CD247P20963 164 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 PDE6BP35913 854 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 KIR2DL1P43626 348 aaPredicted RBP5.51□□□□□ -1.53
VPS50-216ENST00000484954 KIR2DL2P43627 348 aaPredicted RBP5.51□□□□□ -1.53
VPS50-216ENST00000484954 RTP1P59025 263 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 SLC14A2Q15849 920 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 HSF5Q4G112 596 aaPredicted RBP5.51□□□□□ -1.53
VPS50-216ENST00000484954 ANKRD39Q53RE8 183 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 TMEM132EQ6IEE7 984 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 IRF2BP1Q8IU81 584 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 FIBCD1Q8N539 461 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 CXorf38Q8TB03 319 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 KLHL6Q8WZ60 621 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 CRBNQ96SW2 442 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 TGIF2Q9GZN2 237 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 SLC6A17Q9H1V8 727 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 CWC22Q9HCG8 908 aaKnown RBP5.51□□□□□ -1.53
VPS50-216ENST00000484954 PRR13Q9NZ81 148 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 KCTD3Q9Y597 815 aa5.51□□□□□ -1.53
VPS50-216ENST00000484954 GSNP06396 782 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 SNX17Q15036 470 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 NOL9Q5SY16 702 aaKnown RBP5.5□□□□□ -1.53
VPS50-216ENST00000484954 ADGRF1Q5T601 910 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 SLCO6A1Q86UG4 719 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 ADCY4Q8NFM4 1077 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 SMARCC1Q92922 1105 aaPredicted RBP5.5□□□□□ -1.53
VPS50-216ENST00000484954 HAUS7Q99871 368 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 NOL6Q9H6R4 1146 aaKnown RBP5.5□□□□□ -1.53
VPS50-216ENST00000484954 TNFRSF10DQ9UBN6 386 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 INPP5FQ9Y2H2 1132 aa5.5□□□□□ -1.53
VPS50-216ENST00000484954 OTOL1A6NHN0 477 aaPredicted RBP5.49□□□□□ -1.53
VPS50-216ENST00000484954 CELA3BP08861 270 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 GSTM1P09488 218 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 IFNGR1P15260 489 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 SSPNQ14714 243 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 GNPTABQ3T906 1256 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 ZNF385BQ569K4 471 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 SPATA32Q96LK8 384 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 FGD4Q96M96 766 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 ZDHHC15Q96MV8 337 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 JMJD8Q96S16 334 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 MCMBPQ9BTE3 642 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 KLHL25Q9H0H3 589 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 XYLT2Q9H1B5 865 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 ZNF552Q9H707 407 aaPredicted RBP5.49□□□□□ -1.53
VPS50-216ENST00000484954 CCSER2Q9H7U1 834 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 SUSD2Q9UGT4 822 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 FHOD1Q9Y613 1164 aa5.49□□□□□ -1.53
VPS50-216ENST00000484954 EPHX1P07099 455 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 ADRB1P08588 477 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 MSL3P1P0C860 447 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 PPP2R5DQ14738 602 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 PPP2R5EQ16537 467 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 ZDHHC14Q8IZN3 488 aa5.48□□□□□ -1.53
VPS50-216ENST00000484954 C19orf47Q8N9M1 422 aaKnown RBP5.48□□□□□ -1.53
VPS50-216ENST00000484954 ANAPC16Q96DE5 110 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms