RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 RPAP3Q9H6T3 665 aaPredicted RBP9.51□□□□□ -0.89
USP4-210ENST00000483212 PPP1R9AQ9ULJ8 1098 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 ADAMTS5Q9UNA0 930 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 BAZ2BQ9UIF8 2168 aaKnown RBP9.51□□□□□ -0.89
USP4-210ENST00000483212 A0A0G2JMZ2 1700 aa9.51□□□□□ -0.89
USP4-210ENST00000483212 BTBD18B2RXH4 712 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 BAG4O95429 457 aaKnown RBP9.5□□□□□ -0.89
USP4-210ENST00000483212 SNAP25P60880 206 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 TRIM29Q14134 588 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 TREML2Q5T2D2 321 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 FAM173BQ6P4H8 233 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 POTEEQ6S8J3 1075 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 CATSPERGQ6ZRH7 1159 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 HEATR3Q7Z4Q2 680 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 DIS3L2Q8IYB7 885 aaKnown RBP9.5□□□□□ -0.89
USP4-210ENST00000483212 C2orf69Q8N8R5 385 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 PROCA1Q8NCQ7 364 aaPredicted RBP9.5□□□□□ -0.89
USP4-210ENST00000483212 REPS2Q8NFH8 660 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 CHURC1Q8WUH1 139 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 KIFC2Q96AC6 838 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 COA7Q96BR5 231 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 WNK4Q96J92 1243 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 SLF1Q9BQI6 1058 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 ZMYND12Q9H0C1 365 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 FOXP1Q9H334 677 aaPredicted RBP9.5□□□□□ -0.89
USP4-210ENST00000483212 ZSCAN16Q9H4T2 348 aaPredicted RBP9.5□□□□□ -0.89
USP4-210ENST00000483212 SEC63Q9UGP8 760 aaKnown RBP9.5□□□□□ -0.89
USP4-210ENST00000483212 ZNF536O15090 1300 aa9.5□□□□□ -0.89
USP4-210ENST00000483212 MYH15Q9Y2K3 1946 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 OPLAHO14841 1288 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 TAL1P17542 331 aaPredicted RBP9.49□□□□□ -0.89
USP4-210ENST00000483212 XBP1P17861 261 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 HOXA7P31268 230 aaPredicted RBP9.49□□□□□ -0.89
USP4-210ENST00000483212 NR5A1Q13285 461 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 NOM1Q5C9Z4 860 aaKnown RBP9.49□□□□□ -0.89
USP4-210ENST00000483212 EARS2Q5JPH6 523 aaKnown RBP9.49□□□□□ -0.89
USP4-210ENST00000483212 GPAT2Q6NUI2 795 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 BRAPQ7Z569 592 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 PRPF38AQ8NAV1 312 aaKnown RBP9.49□□□□□ -0.89
USP4-210ENST00000483212 SMC1BQ8NDV3 1235 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 CCDC148Q8NFR7 591 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 MS4A4AQ96JQ5 239 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 TANGO6Q9C0B7 1094 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 SLC38A10Q9HBR0 1119 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 TMOD4Q9NZQ9 345 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 ISY1Q9ULR0 285 aaKnown RBP9.49□□□□□ -0.89
USP4-210ENST00000483212 PCDHA4Q9UN74 947 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 MYPNQ86TC9 1320 aa9.49□□□□□ -0.89
USP4-210ENST00000483212 FAM205CA6NFA0 338 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 SPDYE16A6NNV3 312 aaPredicted RBP9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L15C9J2P7 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L13C9JLJ4 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L11C9JVI0 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L18D6R9N7 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L22D6RA61 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L17D6RBQ6 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L19D6RCP7 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L20D6RJB6 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 VWA5AO00534 786 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 FLOT1O75955 427 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 CALML3P27482 149 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 KRT2P35908 639 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 CLK2P49760 499 aaKnown RBP9.48□□□□□ -0.89
USP4-210ENST00000483212 CLCN6P51797 869 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 NAPAP54920 295 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 NLRP5P59047 1200 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 DNM1Q05193 864 aaKnown RBP9.48□□□□□ -0.89
USP4-210ENST00000483212 USP17L24Q0WX57 530 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 IKQ13123 557 aaPredicted RBP9.48□□□□□ -0.89
USP4-210ENST00000483212 MYSM1Q5VVJ2 828 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 SPRYD7Q5W111 196 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 MCTP1Q6DN14 999 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 GALNT17Q6IS24 598 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 SAPCD2Q86UD0 394 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 FBXO11Q86XK2 927 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 NOSTRINQ8IVI9 506 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 BLIDQ8IZY5 108 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 ATG4CQ96DT6 458 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 SLC10A4Q96EP9 437 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 AMNQ9BXJ7 453 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 PCDHA6Q9UN73 950 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 AGTPBP1Q9UPW5 1226 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 PCDHA8Q9Y5H6 950 aa9.48□□□□□ -0.89
USP4-210ENST00000483212 SMCO2A6NFE2 343 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 TOMM70O94826 608 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 ICAM1P05362 532 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 ZBTB48P10074 688 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 FDX1P10109 184 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 MCM4P33991 863 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 TOB1P50616 345 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 HUNKP57058 714 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 GHRHRQ02643 423 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 SNAPC2Q13487 334 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 COG2Q14746 738 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 SAFBQ15424 915 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP4-210ENST00000483212 FOXD4L6Q3SYB3 417 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 CCDC174Q6PII3 467 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 FOXD4L3Q6VB84 417 aaPredicted RBP9.47□□□□□ -0.89
USP4-210ENST00000483212 LBX2Q6XYB7 198 aa9.47□□□□□ -0.89
USP4-210ENST00000483212 GADL1Q6ZQY3 521 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms