RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SEC63Q9UGP8 760 aaKnown RBP14.17□□□□□ -0.14
SDC1-206ENST00000482879 ADAMTS5Q9UNA0 930 aa14.17□□□□□ -0.14
SDC1-206ENST00000482879 PNMA6FA0A0J9YX94 578 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 ZBTB5O15062 677 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 ALDH1A1P00352 501 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 QRICH1Q2TAL8 776 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 LBX2Q6XYB7 198 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 CPXCR1Q8N123 301 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 MB21D1Q8N884 522 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 SPRYD3Q8NCJ5 442 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 SMARCC2Q8TAQ2 1214 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 GTF3C2Q8WUA4 911 aaPredicted RBP14.16□□□□□ -0.14
SDC1-206ENST00000482879 INTS4Q96HW7 963 aaKnown RBP14.16□□□□□ -0.14
SDC1-206ENST00000482879 SLC38A10Q9HBR0 1119 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 RBM27Q9P2N5 1060 aaKnown RBP14.16□□□□□ -0.14
SDC1-206ENST00000482879 SMC3Q9UQE7 1217 aa14.16□□□□□ -0.14
SDC1-206ENST00000482879 STK36Q9NRP7 1315 aa14.15□□□□□ -0.14
SDC1-206ENST00000482879 DEXIO95424 95 aa14.15□□□□□ -0.14
SDC1-206ENST00000482879 FDPSP14324 419 aaKnown RBP14.15□□□□□ -0.14
SDC1-206ENST00000482879 GCLCP48506 637 aaPredicted RBP14.15□□□□□ -0.14
SDC1-206ENST00000482879 SLC4A3P48751 1232 aa14.15□□□□□ -0.14
SDC1-206ENST00000482879 HMGN5P82970 282 aaKnown RBP14.15□□□□□ -0.14
SDC1-206ENST00000482879 PKN1Q16512 942 aa14.15□□□□□ -0.14
SDC1-206ENST00000482879 FBXO11Q86XK2 927 aa14.15□□□□□ -0.14
SDC1-206ENST00000482879 PAGR1Q9BTK6 254 aa14.15□□□□□ -0.14
SDC1-206ENST00000482879 ZFYVE28Q9HCC9 887 aa14.15□□□□□ -0.14
SDC1-206ENST00000482879 RAVER2Q9HCJ3 691 aaKnown RBP14.15□□□□□ -0.14
SDC1-206ENST00000482879 DAXXQ9UER7 740 aaPredicted RBP14.15□□□□□ -0.14
SDC1-206ENST00000482879 SCG2P13521 617 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 GJB2P29033 226 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 PLS1Q14651 629 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 TMEM132BQ14DG7 1078 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 PFKFB3Q16875 520 aaPredicted RBP14.14□□□□□ -0.15
SDC1-206ENST00000482879 POTEEQ6S8J3 1075 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 FAM184AQ8NB25 1140 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 REPS2Q8NFH8 660 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 WASF1Q92558 559 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 AMNQ9BXJ7 453 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 BTBD7Q9P203 1132 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 RBPJLQ9UBG7 517 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 RABGAP1Q9Y3P9 1069 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 ZNF536O15090 1300 aa14.14□□□□□ -0.15
SDC1-206ENST00000482879 A0A0G2JMZ2 1700 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 THSD7BQ9C0I4 1608 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 CA12O43570 354 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 PEX10O60683 326 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 PPP1R11O60927 126 aaPredicted RBP14.13□□□□□ -0.15
SDC1-206ENST00000482879 CNMDO75829 334 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 ICAM1P05362 532 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 STAT3P40763 770 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 OAZ1P54368 228 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 CRHR2Q13324 411 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 USH1GQ495M9 461 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 HEATR3Q7Z4Q2 680 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 ANKRD13CQ8N6S4 541 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 GPKOWQ92917 476 aaPredicted RBP eCLIP14.13□□□□□ -0.15
SDC1-206ENST00000482879 COA7Q96BR5 231 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 AGBL1Q96MI9 1066 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 ALG1Q9BT22 464 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 TXNRD2Q9NNW7 524 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 PNMA2Q9UL42 364 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 CCPG1Q9ULG6 757 aa14.13□□□□□ -0.15
SDC1-206ENST00000482879 ATP2A1O14983 1001 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 TLR2O60603 784 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 TAL1P17542 331 aaPredicted RBP14.12□□□□□ -0.15
SDC1-206ENST00000482879 TRAF1Q13077 416 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 Q3C1V9 767 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 WWC2Q6AWC2 1192 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 SNRNP48Q6IEG0 339 aaKnown RBP14.12□□□□□ -0.15
SDC1-206ENST00000482879 GPRC5AQ8NFJ5 357 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 AIFM3Q96NN9 605 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 TEX13BQ9BXU2 312 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 SPATC1LQ9H0A9 340 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 RNF186Q9NXI6 227 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 CPA4Q9UI42 421 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 ZNF214Q9UL59 606 aaPredicted RBP14.12□□□□□ -0.15
SDC1-206ENST00000482879 KIF3AQ9Y496 699 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 PCDHA1Q9Y5I3 950 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 ADGRA2Q96PE1 1338 aa14.12□□□□□ -0.15
SDC1-206ENST00000482879 ZNFX1Q9P2E3 1918 aaKnown RBP14.11□□□□□ -0.15
SDC1-206ENST00000482879 hCG_1984214I3L0E3 225 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 TRPA1O75762 1119 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 ALAS1P13196 640 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 FOSBP53539 338 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 ERVK-9P63128 1117 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 ERVK-24P63145 666 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 DOCK3Q8IZD9 2030 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 DNAJC5GQ8N7S2 189 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 ZNF713Q8N859 430 aaPredicted RBP14.11□□□□□ -0.15
SDC1-206ENST00000482879 BARHL2Q9NY43 387 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 VPS54Q9P1Q0 977 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 MORF4L1Q9UBU8 362 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 MRPL11Q9Y3B7 192 aaKnown RBP14.11□□□□□ -0.15
SDC1-206ENST00000482879 ABCB11O95342 1321 aa14.11□□□□□ -0.15
SDC1-206ENST00000482879 STXBP3O00186 592 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 TBC1D8O95759 1140 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 BCRP11274 1271 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 XBP1P17861 261 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 NAPAP54920 295 aa14.1□□□□□ -0.15
SDC1-206ENST00000482879 CCNA1P78396 465 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms