RNA–Protein interactions for RNA: ENST00000480658.5

CCM2-213, Transcript of CCM2 scaffold protein, human

TSL 2

Gene CCM2, Length 1,136 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-213	ENST00000480658	RAVER2	Q9HCJ3	691 aa	Known RBP	13.47	□□□□□ -0.25
CCM2-213	ENST00000480658	IL17RB	Q9NRM6	502 aa		13.47	□□□□□ -0.25
CCM2-213	ENST00000480658	RBM27	Q9P2N5	1060 aa	Known RBP	13.47	□□□□□ -0.25
CCM2-213	ENST00000480658	FAM184B	Q9ULE4	1060 aa		13.47	□□□□□ -0.25
CCM2-213	ENST00000480658	LAMA4	Q16363	1823 aa		13.47	□□□□□ -0.25
CCM2-213	ENST00000480658	MROH7	Q68CQ1	1323 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	MOXD2P	A6NHM9	499 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658		B4DLN1	442 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	POTEB2	H3BUK9	544 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	ICAM1	P05362	532 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	PGK2	P07205	417 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	FXR1	P51114	621 aa	Known RBP eCLIP	13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	MRPL12	P52815	198 aa	Known RBP	13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	GPR153	Q6NV75	609 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	BTNL9	Q6UXG8	535 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	PCSK9	Q8NBP7	692 aa	Known RBP	13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	TRPV1	Q8NER1	839 aa		13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	ADD3	Q9UEY8	706 aa	Known RBP	13.46	□□□□□ -0.25
CCM2-213	ENST00000480658	PLXNA1	Q9UIW2	1896 aa		13.46	□□□□□ -0.26
CCM2-213	ENST00000480658	TRDN	Q13061	729 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	POTED	Q86YR6	584 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	TRERF1	Q96PN7	1200 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	GDF15	Q99988	308 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	SEZ6L	Q9BYH1	1024 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	RANBP17	Q9H2T7	1088 aa	Known RBP	13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	RNF146	Q9NTX7	359 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	CCPG1	Q9ULG6	757 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	PRR12	Q9ULL5	1215 aa		13.45	□□□□□ -0.26
CCM2-213	ENST00000480658	WDR19	Q8NEZ3	1342 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	DUSP11	O75319	330 aa	Known RBP	13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	CST5	P28325	142 aa	Predicted RBP	13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	SLC4A3	P48751	1232 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	ACVR2B	Q13705	512 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	SNX17	Q15036	470 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	LRRC41	Q15345	812 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	LRRC26	Q2I0M4	334 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	SYDE2	Q5VT97	1194 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	KCTD1	Q719H9	257 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	TDH	Q8IZJ6	230 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	TMEM47	Q9BQJ4	181 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	UBAC1	Q9BSL1	405 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	KAT14	Q9H8E8	782 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	HOMER2	Q9NSB8	354 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	PHF24	Q9UPV7	400 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	RIPK3	Q9Y572	518 aa		13.44	□□□□□ -0.26
CCM2-213	ENST00000480658	NMT2	O60551	498 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	PDHB	P11177	359 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	ALAS1	P13196	640 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	HAND2	P61296	217 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	TRAF1	Q13077	416 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	GJC2	Q5T442	439 aa	Predicted RBP	13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	TTC22	Q5TAA0	569 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	SLC39A5	Q6ZMH5	540 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	ARMCX2	Q7L311	632 aa		13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	UBE2O	Q9C0C9	1292 aa	Known RBP	13.43	□□□□□ -0.26
CCM2-213	ENST00000480658		U3KPZ7	1027 aa	Predicted RBP	13.43	□□□□□ -0.26
CCM2-213	ENST00000480658	ZNF536	O15090	1300 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	ELP1	O95163	1332 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	ZEB2	O60315	1214 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	MYCN	P04198	464 aa	Predicted RBP	13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	SNHG28	P0DPA3	235 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	MAGEA10	P43363	369 aa	Predicted RBP	13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	RTP1	P59025	263 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	ZNF543	Q08ER8	600 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	SART3	Q15020	963 aa	Known RBP	13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	LRIT3	Q3SXY7	679 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	ASPRV1	Q53RT3	343 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	CCDC144CP	Q8IYA2	1237 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	FAM133A	Q8N9E0	248 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	GLT1D1	Q96MS3	346 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	A1CF	Q9NQ94	594 aa	Known RBP	13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.42	□□□□□ -0.26
CCM2-213	ENST00000480658		Q9Y3F1	56 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	ALPK3	Q96L96	1907 aa		13.42	□□□□□ -0.26
CCM2-213	ENST00000480658	SYNRG	Q9UMZ2	1314 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	ERICH2	A1L162	156 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	KDM4A	O75164	1064 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	CABYR	O75952	493 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	ATN1	P54259	1190 aa	Predicted RBP	13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	PRAMEF19	Q5SWL8	479 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	CCDC174	Q6PII3	467 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	TBC1D10C	Q8IV04	446 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	PNMA1	Q8ND90	353 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	ANKS1A	Q92625	1134 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	AGBL1	Q96MI9	1066 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	TOX2	Q96NM4	488 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	VTA1	Q9NP79	307 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	STARD7	Q9NQZ5	370 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	CYP39A1	Q9NYL5	469 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	ATP11B	Q9Y2G3	1177 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	TACC3	Q9Y6A5	838 aa		13.41	□□□□□ -0.26
CCM2-213	ENST00000480658	NEDD4	P46934	1319 aa		13.4	□□□□□ -0.26
CCM2-213	ENST00000480658		A0A1W2PQ45	241 aa	Predicted RBP	13.4	□□□□□ -0.26
CCM2-213	ENST00000480658		A0A1W2PQY0	241 aa		13.4	□□□□□ -0.26
CCM2-213	ENST00000480658	ADAMTS4	O75173	837 aa		13.4	□□□□□ -0.26

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