RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 BRPF3Q9ULD4 1205 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 LIMCH1Q9UPQ0 1083 aa9.58□□□□□ -0.88
USP54-212ENST00000480210 FRMPD2Q68DX3 1309 aaPredicted RBP9.57□□□□□ -0.88
USP54-212ENST00000480210 PNMA6FA0A0J9YX94 578 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 CPLX1O14810 134 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 ZBTB5O15062 677 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 PFKFB2O60825 505 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 ICAM1P05362 532 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 AK2P54819 239 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 FCGRTP55899 365 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 LACTBP83111 547 aaPredicted RBP9.57□□□□□ -0.88
USP54-212ENST00000480210 AKAP17AQ02040 695 aaKnown RBP9.57□□□□□ -0.88
USP54-212ENST00000480210 TTBK2Q6IQ55 1244 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 TMTC3Q6ZXV5 915 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 ABRAQ8N0Z2 381 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 STAG2Q8N3U4 1231 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 REPS2Q8NFH8 660 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 COA7Q96BR5 231 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 RRP36Q96EU6 259 aaKnown RBP9.57□□□□□ -0.88
USP54-212ENST00000480210 PAGR1Q9BTK6 254 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 AMNQ9BXJ7 453 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 GPHNQ9NQX3 736 aaPredicted RBP9.57□□□□□ -0.88
USP54-212ENST00000480210 FBXO28Q9NVF7 368 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 SLC5A4Q9NY91 659 aa9.57□□□□□ -0.88
USP54-212ENST00000480210 SEC63Q9UGP8 760 aaKnown RBP9.57□□□□□ -0.88
USP54-212ENST00000480210 NAP1L2Q9ULW6 460 aaPredicted RBP9.57□□□□□ -0.88
USP54-212ENST00000480210 ABCB11O95342 1321 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 CNMDO75829 334 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 GOLGA8HP0CJ92 632 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 HSPA8P11142 646 aaKnown RBP9.56□□□□□ -0.88
USP54-212ENST00000480210 IFNAR1P17181 557 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 SLC16A2P36021 539 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 TMEM132BQ14DG7 1078 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 PKN2Q16513 984 aaKnown RBP9.56□□□□□ -0.88
USP54-212ENST00000480210 Q3C1V9 767 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 FBXO11Q86XK2 927 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 MCF2L2Q86YR7 1114 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 TRIM22Q8IYM9 498 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 RGS22Q8NE09 1264 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 ZNF296Q8WUU4 475 aaPredicted RBP9.56□□□□□ -0.88
USP54-212ENST00000480210 RNF26Q9BY78 433 aaPredicted RBP9.56□□□□□ -0.88
USP54-212ENST00000480210 UBA5Q9GZZ9 404 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 GLT8D2Q9H1C3 349 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 JMJD4Q9H9V9 463 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 CWC22Q9HCG8 908 aaKnown RBP9.56□□□□□ -0.88
USP54-212ENST00000480210 BTBD7Q9P203 1132 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 ZNF214Q9UL59 606 aaPredicted RBP9.56□□□□□ -0.88
USP54-212ENST00000480210 MRPL11Q9Y3B7 192 aaKnown RBP9.56□□□□□ -0.88
USP54-212ENST00000480210 IVNS1ABPQ9Y6Y0 642 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 PLXNB2O15031 1838 aa9.56□□□□□ -0.88
USP54-212ENST00000480210 PLXNA1Q9UIW2 1896 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 SLC15A5A6NIM6 579 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 FOXN1O15353 648 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 PRPF3O43395 683 aaKnown RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 PSMC4P43686 418 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 COL9A3Q14050 684 aaPredicted RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 PLS1Q14651 629 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 CDC37Q16543 378 aaPredicted RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 SNRNP48Q6IEG0 339 aaKnown RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 SAMD1Q6SPF0 538 aaPredicted RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 PLEKHH3Q7Z736 793 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 TRMT44Q8IYL2 757 aaKnown RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 CPXCR1Q8N123 301 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 SRBD1Q8N5C6 995 aaKnown RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 CCDC12Q8WUD4 166 aaPredicted RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 SOCS4Q8WXH5 440 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 WASF1Q92558 559 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 NUDT12Q9BQG2 462 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 LLPHQ9BRT6 129 aaKnown RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 MYL10Q9BUA6 226 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 MOV10L1Q9BXT6 1211 aaKnown RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 R3HDMLQ9H3Y0 253 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 ACAD9Q9H845 621 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 EFCC1Q9HA90 598 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 VAT1LQ9HCJ6 419 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 TXNRD2Q9NNW7 524 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 FAM217BQ9NTX9 383 aaPredicted RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 CCPG1Q9ULG6 757 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 TPCN1Q9ULQ1 816 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 HPS5Q9UPZ3 1129 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 DIS3Q9Y2L1 958 aaKnown RBP9.55□□□□□ -0.88
USP54-212ENST00000480210 ZNF536O15090 1300 aa9.55□□□□□ -0.88
USP54-212ENST00000480210 LOC102724159A0A0B4J2E5 919 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 B4DLN1 442 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 TNPO2O14787 897 aaKnown RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 CYTH3O43739 400 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 FMNL1O95466 1100 aaPredicted RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 FCER1AP12319 257 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 XBP1P17861 261 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 ERCC3P19447 782 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 CDC27P30260 824 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 ADD1P35611 737 aaKnown RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 MRPL12P52815 198 aaKnown RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 CCT2P78371 535 aaKnown RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 SSRP1Q08945 709 aaKnown RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 PWP2Q15269 919 aaKnown RBP9.54□□□□□ -0.88
USP54-212ENST00000480210 NTRK3Q16288 839 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 QRICH1Q2TAL8 776 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 CCDC174Q6PII3 467 aa9.54□□□□□ -0.88
USP54-212ENST00000480210 GPR142Q7Z601 462 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms