RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 GKAP1Q5VSY0 366 aaPredicted RBP23.56■■□□□ 1.36
SDF4-206ENST00000478938 KANK3Q6NY19 840 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 NOC3LQ8WTT2 800 aaKnown RBP23.56■■□□□ 1.36
SDF4-206ENST00000478938 RAPGEF5Q92565 580 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 RBM33Q96EV2 1170 aaKnown RBP23.56■■□□□ 1.36
SDF4-206ENST00000478938 PURBQ96QR8 312 aaKnown RBP23.56■■□□□ 1.36
SDF4-206ENST00000478938 ZCWPW1Q9H0M4 648 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 PAPOLBQ9NRJ5 636 aaKnown RBP23.56■■□□□ 1.36
SDF4-206ENST00000478938 KCNJ18B7U540 433 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 SH2B2O14492 632 aaPredicted RBP23.56■■□□□ 1.36
SDF4-206ENST00000478938 KCNJ12Q14500 433 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 ZMYM1Q5SVZ6 1142 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 KSR2Q6VAB6 950 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 MB21D2Q8IYB1 491 aaPredicted RBP23.56■■□□□ 1.36
SDF4-206ENST00000478938 OR2W6PQ8NHA6 318 aa23.56■■□□□ 1.36
SDF4-206ENST00000478938 C4AP0C0L4 1744 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 C4BP0C0L5 1744 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 M0R2C6 588 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 PAK2Q13177 524 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 TRADDQ15628 312 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 TCP11X2Q5H9J9 407 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 IFT20Q8IY31 132 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 ARFGAP2Q8N6H7 521 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 EZH1Q92800 747 aaPredicted RBP23.55■■□□□ 1.36
SDF4-206ENST00000478938 CSRNP2Q9H175 543 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 MLXIPQ9HAP2 919 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 LMCD1Q9NZU5 365 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 A6NHS1 94 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 LRRC10BA6NIK2 292 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 SPDYE3A6NKU9 549 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 ZNF662Q6ZS27 426 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 MFN1Q8IWA4 741 aa23.55■■□□□ 1.36
SDF4-206ENST00000478938 NCK2O43639 380 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 HEXIM1O94992 359 aaKnown RBP23.54■■□□□ 1.36
SDF4-206ENST00000478938 ATP4AP20648 1035 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 CDC37Q16543 378 aaPredicted RBP23.54■■□□□ 1.36
SDF4-206ENST00000478938 TSR1Q2NL82 804 aaKnown RBP23.54■■□□□ 1.36
SDF4-206ENST00000478938 CPLX4Q7Z7G2 160 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 STAMQ92783 540 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 TSC22D3Q99576 134 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 LRWD1Q9UFC0 647 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 CNOT8Q9UFF9 292 aaKnown RBP23.54■■□□□ 1.36
SDF4-206ENST00000478938 WDR17Q8IZU2 1322 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 GOLGA6L10A6NI86 522 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 CTCFP49711 727 aaPredicted RBP23.54■■□□□ 1.36
SDF4-206ENST00000478938 TRIM29Q14134 588 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 TXNDC2Q86VQ3 553 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 ZFATQ9P243 1243 aa23.54■■□□□ 1.36
SDF4-206ENST00000478938 TRIM37O94972 964 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 RIPK1Q13546 671 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 SLMAPQ14BN4 828 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 MREGQ8N565 214 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 B4GALNT2Q8NHY0 566 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 P3H4Q92791 437 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 PAGE5Q96GU1 130 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 PAIP2Q9BPZ3 127 aaKnown RBP23.53■■□□□ 1.36
SDF4-206ENST00000478938 GDF3Q9NR23 364 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 MYO5AQ9Y4I1 1855 aaKnown RBP23.53■■□□□ 1.36
SDF4-206ENST00000478938 BTBD18B2RXH4 712 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 MOCS3O95396 460 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 NOSTRINQ8IVI9 506 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 SPICE1Q8N0Z3 855 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 CCHCR1Q8TD31 782 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 OSBPL1AQ9BXW6 950 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 NHEJ1Q9H9Q4 299 aaPredicted RBP23.53■■□□□ 1.36
SDF4-206ENST00000478938 PAG1Q9NWQ8 432 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 PCDHB6Q9Y5E3 794 aa23.53■■□□□ 1.36
SDF4-206ENST00000478938 CCT8L1PA6NM43 557 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 MAP3K13O43283 966 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 CYLC1P35663 651 aaPredicted RBP23.52■■□□□ 1.36
SDF4-206ENST00000478938 RANBP1P43487 201 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 METAP2P50579 478 aaKnown RBP eCLIP23.52■■□□□ 1.365e-7■■□□□ 11.7
SDF4-206ENST00000478938 KIF5AQ12840 1032 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 MS4A14Q96JA4 679 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 VPS54Q9P1Q0 977 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 UBN2Q6ZU65 1347 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 F8W031 263 aaPredicted RBP23.52■■□□□ 1.36
SDF4-206ENST00000478938 H7C1W4 665 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 LIN7AO14910 233 aaPredicted RBP23.52■■□□□ 1.36
SDF4-206ENST00000478938 CCDC96Q2M329 555 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 KRT26Q7Z3Y9 468 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 C1orf131Q8NDD1 294 aaKnown RBP23.52■■□□□ 1.36
SDF4-206ENST00000478938 PRCCQ92733 491 aaPredicted RBP23.52■■□□□ 1.36
SDF4-206ENST00000478938 CNKSR1Q969H4 720 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 EPAS1Q99814 870 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 TAF1DQ9H5J8 278 aaPredicted RBP23.52■■□□□ 1.36
SDF4-206ENST00000478938 FMN2Q9NZ56 1722 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 FLT4P35916 1363 aa23.52■■□□□ 1.36
SDF4-206ENST00000478938 A0A1B0GVG6 124 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 SMIM24O75264 130 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 PYGBP11216 843 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 FERP16591 822 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 DRD4P21917 467 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 MAEAQ7L5Y9 396 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 LINS1Q8NG48 757 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 CASKIN2Q8WXE0 1202 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 EPSTI1Q96J88 318 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 GCOM1H8Y6P7 765 aaPredicted RBP23.51■■□□□ 1.35
SDF4-206ENST00000478938 MYZAPP0CAP1 466 aa23.51■■□□□ 1.35
SDF4-206ENST00000478938 ROR2Q01974 943 aaKnown RBP23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms