RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TMC3Q7Z5M5 1100 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 NECAB2Q7Z6G3 386 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 STRA8Q7Z7C7 330 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 ANKLE2Q86XL3 938 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 ARMC10Q8N2F6 343 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 TOP6BLQ8N6T0 577 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 DTWD2Q8NBA8 298 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 GIMAP7Q8NHV1 300 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 ENOX1Q8TC92 643 aaKnown RBP7.07□□□□□ -1.28
UPF3B-203ENST00000478840 DCAF4Q8WV16 495 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 COPS5Q92905 334 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 Q96M66 194 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 KCNH3Q9ULD8 1083 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 FAN1Q9Y2M0 1017 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 PHLDB1Q86UU1 1377 aa7.07□□□□□ -1.28
UPF3B-203ENST00000478840 FAM95CA0A1B0GW59 222 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 B4E1Z4 1266 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 GSNP06396 782 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 BMP3P12645 472 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 KCNJ6P48051 423 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 IREB2P48200 963 aaKnown RBP7.06□□□□□ -1.28
UPF3B-203ENST00000478840 RASSF7Q02833 373 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 CDK5R2Q13319 367 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 DENND5AQ6IQ26 1287 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 RSPO2Q6UXX9 243 aaPredicted RBP7.06□□□□□ -1.28
UPF3B-203ENST00000478840 PODNQ7Z5L7 613 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 FAM20CQ8IXL6 584 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 BEND7Q8N7W2 519 aaPredicted RBP7.06□□□□□ -1.28
UPF3B-203ENST00000478840 ATL2Q8NHH9 583 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 PIWIL2Q8TC59 973 aaKnown RBP7.06□□□□□ -1.28
UPF3B-203ENST00000478840 MAGEB10Q96LZ2 347 aaPredicted RBP7.06□□□□□ -1.28
UPF3B-203ENST00000478840 ZDHHC15Q96MV8 337 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 DSCC1Q9BVC3 393 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 CHST7Q9NS84 486 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 TPX2Q9ULW0 747 aaKnown RBP7.06□□□□□ -1.28
UPF3B-203ENST00000478840 GPR55Q9Y2T6 319 aaPredicted RBP7.06□□□□□ -1.28
UPF3B-203ENST00000478840 NPFFR2Q9Y5X5 522 aa7.06□□□□□ -1.28
UPF3B-203ENST00000478840 BLACEA4D250 179 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 AQP7O14520 342 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 OPA1O60313 960 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 BRINP1O60477 761 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 VAMP4O75379 141 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 PRAMEF1O95521 474 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 ZNF865P0CJ78 1059 aaPredicted RBP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 NAT1P18440 290 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 FLT3P36888 993 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 POU4F1Q01851 419 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 NMIQ13287 307 aaPredicted RBP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 ZNF460Q14592 562 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 MBTPS1Q14703 1052 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 PCBP1Q15365 356 aaKnown RBP eCLIP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 SFRP5Q5T4F7 317 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 ACBD5Q5T8D3 534 aaPredicted RBP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 RNF219Q5W0B1 726 aaPredicted RBP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 PKN3Q6P5Z2 889 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 KIF18BQ86Y91 864 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 LEO1Q8WVC0 666 aaPredicted RBP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 UTP4Q969X6 686 aaKnown RBP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 ZFYVE21Q9BQ24 234 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 LGR6Q9HBX8 967 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 PRDM5Q9NQX1 630 aaPredicted RBP7.05□□□□□ -1.28
UPF3B-203ENST00000478840 ST14Q9Y5Y6 855 aa7.05□□□□□ -1.28
UPF3B-203ENST00000478840 ASXL2Q76L83 1435 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 H0Y8X5 98 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 IGF2BP3O00425 579 aaKnown RBP eCLIP7.04□□□□□ -1.28
UPF3B-203ENST00000478840 AURKAO14965 403 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 GDF11O95390 407 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 CTSKP43235 329 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 EPHB1P54762 984 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 SEPT7Q16181 437 aaKnown RBP7.04□□□□□ -1.28
UPF3B-203ENST00000478840 PRSS53Q2L4Q9 553 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 PAOXQ6QHF9 649 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 DAGLBQ8NCG7 672 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 NPLOC4Q8TAT6 608 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 SCARF2Q96GP6 870 aaPredicted RBP7.04□□□□□ -1.28
UPF3B-203ENST00000478840 HDAC8Q9BY41 377 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 RNF112Q9ULX5 631 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 EID1Q9Y6B2 187 aa7.04□□□□□ -1.28
UPF3B-203ENST00000478840 GPR39O43194 453 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 LEFTY1O75610 366 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 ALDH1L1O75891 902 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 RASGRP1O95267 797 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 CRTAMO95727 393 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 APBA3O96018 575 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 JMJD7P0C870 316 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 SRFP11831 508 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 KCNA6P17658 529 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 COL8A1P27658 744 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 ECI1P42126 302 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 GUCY2FP51841 1108 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 NEK4P51957 841 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 SCRN1Q12765 414 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 ZCCHC8Q6NZY4 707 aaKnown RBP7.03□□□□□ -1.28
UPF3B-203ENST00000478840 USP53Q70EK8 1073 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 ALYREFQ86V81 257 aaKnown RBP7.03□□□□□ -1.28
UPF3B-203ENST00000478840 FMNL3Q8IVF7 1028 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 FRS2Q8WU20 508 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 GATA6Q92908 595 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 MEGF10Q96KG7 1140 aa7.03□□□□□ -1.28
UPF3B-203ENST00000478840 MCMBPQ9BTE3 642 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms