RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 KIAA0825Q8IV33 1275 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 CDCA5Q96FF9 252 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 PUS3Q9BZE2 481 aaKnown RBP8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 PRDM10Q9NQV6 1147 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 NOB1Q9ULX3 412 aaKnown RBP8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 HDAC5Q9UQL6 1122 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 RIPOR2Q9Y4F9 1068 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 KIF16BQ96L93 1317 aa8.5□□□□□ -1.05
CCDC88A-213ENST00000476903 WNT10BO00744 389 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 AOC2O75106 756 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 UBTFL1P0CB47 393 aaPredicted RBP8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 TXKP42681 527 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 RARSP54136 660 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 NOGQ13253 232 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 NBPF9Q3BBW0 867 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 METTL24Q5JXM2 366 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 RGMBQ6NW40 437 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 ADAMTS19Q8TE59 1207 aa8.49□□□□□ -1.05
CCDC88A-213ENST00000476903 CA12O43570 354 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 SASH1O94885 1247 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 HSPA8P11142 646 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 HIBADHP31937 336 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 NF2P35240 595 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 GYG1P46976 350 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 ATP1A2P50993 1020 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 ZNF157P51786 506 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 LBX1P52954 281 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 FKBP1BP68106 108 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 DLGAP5Q15398 846 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 LRRC24Q50LG9 513 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 CAVIN4Q5BKX8 364 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 VPS37DQ86XT2 251 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 WFDC8Q8IUA0 241 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 APOBEC3FQ8IUX4 373 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 SIX5Q8N196 739 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 TMEM130Q8N3G9 435 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 CERS5Q8N5B7 392 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 TDRD7Q8NHU6 1098 aaKnown RBP8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 ARHGAP45Q92619 1136 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 PNMA5Q96PV4 448 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 COL1A1P02452 1464 aaPredicted RBP8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 FAM205AQ6ZU69 1335 aa8.48□□□□□ -1.05
CCDC88A-213ENST00000476903 F8W031 263 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 TGFBR3LH3BV60 316 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 IPO8O15397 1037 aaKnown RBP8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 MYO1BO43795 1136 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 ALX3O95076 343 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 PDE8BO95263 885 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 PUM3Q15397 648 aaKnown RBP8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 HIF1AQ16665 826 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 MFSD14BQ5SR56 506 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 USP17L2Q6R6M4 530 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 VGLL2Q8N8G2 317 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 KLHDC4Q8TBB5 520 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 ZBED3Q96IU2 234 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 FAM84BQ96KN1 310 aaPredicted RBP8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 SCAF8Q9UPN6 1271 aaKnown RBP8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 JAG2Q9Y219 1238 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 CASP8AP2Q9UKL3 1982 aa8.47□□□□□ -1.05
CCDC88A-213ENST00000476903 FAM155AB1AL88 458 aaPredicted RBP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 EYA2O00167 538 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 FRAT2O75474 233 aaPredicted RBP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 IFIT1P09914 478 aaKnown RBP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 INPP5BP32019 993 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 RFX5P48382 616 aaPredicted RBP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 HNRNPUQ00839 825 aaKnown RBP eCLIP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 PTPN12Q05209 780 aaKnown RBP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 PCSK7Q16549 785 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 CFAP100Q494V2 611 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 PRAMEF18Q5VWM3 479 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 INTS3Q68E01 1043 aaKnown RBP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 Q6ZS46 218 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 FBXO33Q7Z6M2 555 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 IFT43Q96FT9 208 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 UCN2Q96RP3 112 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 AKTIPQ9H8T0 292 aa8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 OAS3Q9Y6K5 1087 aaKnown RBP8.46□□□□□ -1.06
CCDC88A-213ENST00000476903 PALM3A6NDB9 673 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 KIAA1324LA8MWY0 1029 aaPredicted RBP8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 CIAO1O76071 339 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 GNAI3P08754 354 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 SLC5A1P13866 664 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 RBM5P52756 815 aaKnown RBP eCLIP8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 GPLD1P80108 840 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 DHX32Q7L7V1 743 aaKnown RBP8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 ARMC9Q7Z3E5 817 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 TBC1D22AQ8WUA7 517 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 SERPINA10Q9UK55 444 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 TTF2Q9UNY4 1162 aaKnown RBP8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 PPP2R3BQ9Y5P8 575 aa8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 LRRFIP2Q9Y608 721 aaKnown RBP8.45□□□□□ -1.06
CCDC88A-213ENST00000476903 CLRN2A0PK11 232 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 F8W735 103 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 BCAR3O75815 825 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 TRIM27P14373 513 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 FGFR2P21802 821 aa8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 TARSP26639 723 aaKnown RBP8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 KIF23Q02241 960 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 CHAF1AQ13111 956 aaPredicted RBP8.44□□□□□ -1.06
CCDC88A-213ENST00000476903 RTN1Q16799 776 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms