RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 STIM2Q9P246 746 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 WDR35Q9P2L0 1181 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 ADAMTS8Q9UP79 889 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 SERTM1A2A2V5 107 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 DCAF8L1A6NGE4 600 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 TTC34A8MYJ7 566 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 TIPRLO75663 272 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 FERP16591 822 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 TYRP1P17643 537 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 YY1P25490 414 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 HOXD12P35452 270 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 ZNF76P36508 570 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 AKAP17AQ02040 695 aaKnown RBP3.9□□□□□ -1.78
UBR3-208ENST00000474426 ARRDC4Q8NCT1 418 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 PSKH2Q96QS6 385 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 ZPBPQ9BS86 351 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 FOXP3Q9BZS1 431 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 A1CFQ9NQ94 594 aaKnown RBP3.9□□□□□ -1.78
UBR3-208ENST00000474426 TBC1D22BQ9NU19 505 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 SNTG2Q9NY99 539 aa3.9□□□□□ -1.78
UBR3-208ENST00000474426 RSF1Q96T23 1441 aaPredicted RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 RASSF10A6NK89 507 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 J3KRW8 73 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 RNF113AO15541 343 aaKnown RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 TTI1O43156 1089 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 SNX4O95219 450 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 GUCA1CO95843 209 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 CES1P23141 567 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 PLTPP55058 493 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 KIF22Q14807 665 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 CCNG2Q16589 344 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 CREB3L3Q68CJ9 461 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 TRIM68Q6AZZ1 485 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 CORO6Q6QEF8 472 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 ENAHQ8N8S7 591 aaPredicted RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 OR6C4Q8NGE1 309 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 MIPOL1Q8TD10 442 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 CTNNBL1Q8WYA6 563 aaPredicted RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 RNF34Q969K3 372 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 MAML3Q96JK9 1138 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 TCEANC2Q96MN5 208 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 PPP1R9BQ96SB3 815 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 HERPUD2Q9BSE4 406 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 CARD11Q9BXL7 1154 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 SRRTQ9BXP5 876 aaKnown RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 MTMR12Q9C0I1 747 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 WNT5BQ9H1J7 359 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 KIF9Q9HAQ2 790 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 RGL1Q9NZL6 768 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 IL1RAPL1Q9NZN1 696 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 EDARQ9UNE0 448 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 LOC102724428A0A0B4J2F2 783 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 FAM155AB1AL88 458 aaPredicted RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 TEX28O15482 410 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 UBL4AP11441 157 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 CDK4P11802 303 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 ALAS2P22557 587 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 RPIAP49247 311 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 SIK1P57059 783 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 SKOR1P84550 965 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 NMIQ13287 307 aaPredicted RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 PDE1CQ14123 709 aaPredicted RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 SPATA1Q5VX52 437 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 INTS3Q68E01 1043 aaKnown RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 LIN54Q6MZP7 749 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 USP51Q70EK9 711 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 DDX42Q86XP3 938 aaKnown RBP eCLIP3.9□□□□□ -1.79
UBR3-208ENST00000474426 TCP11Q8WWU5 503 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 SRPK1Q96SB4 655 aaKnown RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 ASPSCR1Q9BZE9 553 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 TNKS2Q9H2K2 1166 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 ZNF219Q9P2Y4 722 aaPredicted RBP3.9□□□□□ -1.79
UBR3-208ENST00000474426 CARD8Q9Y2G2 431 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 SSUH2Q9Y2M2 353 aa3.9□□□□□ -1.79
UBR3-208ENST00000474426 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.89□□□□□ -1.79
UBR3-208ENST00000474426 GOLGA8AA7E2F4 631 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 PDLIM1O00151 329 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 TADA3O75528 432 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 VIMP08670 466 aaKnown RBP3.89□□□□□ -1.79
UBR3-208ENST00000474426 DESP17661 470 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 FGFR4P22455 802 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 DNAJB1P25685 340 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 NF2P35240 595 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 KRT20P35900 424 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 TUFMP49411 452 aaKnown RBP3.89□□□□□ -1.79
UBR3-208ENST00000474426 TPD52P55327 224 aaPredicted RBP3.89□□□□□ -1.79
UBR3-208ENST00000474426 ACY1Q03154 408 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 ASIC2Q16515 512 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 METTL24Q5JXM2 366 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 NAA16Q6N069 864 aaPredicted RBP3.89□□□□□ -1.79
UBR3-208ENST00000474426 XRRA1Q6P2D8 792 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 SH3BP5LQ7L8J4 393 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 FAM9CQ8IZT9 166 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 TAB3Q8N5C8 712 aaPredicted RBP3.89□□□□□ -1.79
UBR3-208ENST00000474426 CCHCR1Q8TD31 782 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 GCC1Q96CN9 775 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 HOMER3Q9NSC5 361 aa3.89□□□□□ -1.79
UBR3-208ENST00000474426 TUBA8Q9NY65 449 aaPredicted RBP3.89□□□□□ -1.79
UBR3-208ENST00000474426 IL20Q9NYY1 176 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms