RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 RAPGEF1Q13905 1077 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 NXNQ6DKJ4 435 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 ZNF280DQ6N043 979 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 HEATR4Q86WZ0 1026 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 RPGRQ92834 1020 aaKnown RBP9.81□□□□□ -0.84
COL6A3-210ENST00000473258 ING2Q9H160 280 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 TMEM60Q9H2L4 133 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 ECT2Q9H8V3 914 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 POLKQ9UBT6 870 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 UACAQ9BZF9 1416 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 SBNO1A3KN83 1393 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 POTEFA5A3E0 1075 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 EIF3BP55884 814 aaKnown RBP9.81□□□□□ -0.84
COL6A3-210ENST00000473258 PSME1Q06323 249 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 SPATA21Q7Z572 469 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 UHMK1Q8TAS1 419 aaKnown RBP9.81□□□□□ -0.84
COL6A3-210ENST00000473258 GSDMAQ96QA5 445 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 DPH5Q9H2P9 285 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 SLC40A1Q9NP59 571 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 DSEQ9UL01 958 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 TAF4O00268 1085 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 THAP12O43422 761 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 ZMYND10O75800 440 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 TRIM27P14373 513 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 ASIC1P78348 528 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 ST5P78524 1137 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 FKBP4Q02790 459 aaKnown RBP eCLIP9.81□□□□□ -0.84
COL6A3-210ENST00000473258 NFE2L2Q16236 605 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 C1orf146Q5VVC0 180 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 CDR2LQ86X02 465 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-210ENST00000473258 KRT73Q86Y46 540 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 STX18Q9P2W9 335 aaKnown RBP9.81□□□□□ -0.84
COL6A3-210ENST00000473258 STRIP2Q9ULQ0 834 aa9.81□□□□□ -0.84
COL6A3-210ENST00000473258 EEF1GP26641 437 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 WASHC5Q12768 1159 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 ASPHQ12797 758 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 ATAD3BQ5T9A4 648 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 BZW1Q7L1Q6 419 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 ATP6V1E2Q96A05 226 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 NOC4LQ9BVI4 516 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 UPF3AQ9H1J1 476 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 EURLQ9NYK6 297 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 PCDHGA3Q9Y5H0 932 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 PEX14O75381 377 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 IGHMBP2P38935 993 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 IL1RL1Q01638 556 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 KPNB1Q14974 876 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 MBD2Q9UBB5 411 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 MYO1FO00160 1098 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 AHCYL1O43865 530 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 SDSP20132 328 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 ROR2Q01974 943 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 BRAPQ7Z569 592 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 SUN5Q8TC36 379 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 TYW1Q9NV66 732 aaKnown RBP9.8□□□□□ -0.84
COL6A3-210ENST00000473258 POTEIP0CG38 1075 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 SCG2P13521 617 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 ACADSP16219 412 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 PPP1R2P41236 205 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 EVA1CP58658 441 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 CDR2Q01850 454 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 CCDC103Q8IW40 242 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 SLC35F6Q8N357 371 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 ST7Q9NRC1 585 aa9.8□□□□□ -0.84
COL6A3-210ENST00000473258 RSPH10B2B2RC85 870 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 HEXIM1O94992 359 aaKnown RBP9.79□□□□□ -0.84
COL6A3-210ENST00000473258 RSPH10BP0C881 870 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 OR8K1Q8NGG5 319 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 TDRD7Q8NHU6 1098 aaKnown RBP9.79□□□□□ -0.84
COL6A3-210ENST00000473258 ANKRD7Q92527 254 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 ARHGAP26Q9UNA1 814 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 GNGT2O14610 69 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 BAIAP3O94812 1187 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 TUBA4AP68366 448 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 KIRREL3Q8IZU9 778 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 HIPK4Q8NE63 616 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 CATSPER1Q8NEC5 780 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 CCT7Q99832 543 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 SNX25Q9H3E2 840 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 CAAP1Q9H8G2 361 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 EPB41L5Q9HCM4 733 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 TRPC7Q9HCX4 862 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 DISC1Q9NRI5 854 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 NRBP1Q9UHY1 535 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 ATP6V1HQ9UI12 483 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 ADARP55265 1226 aaKnown RBP9.79□□□□□ -0.84
COL6A3-210ENST00000473258 ICA1Q05084 483 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 KRR1Q13601 381 aaKnown RBP9.79□□□□□ -0.84
COL6A3-210ENST00000473258 NDUFA5Q16718 116 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 RSRC2Q7L4I2 434 aaKnown RBP9.79□□□□□ -0.84
COL6A3-210ENST00000473258 CATSPER3Q86XQ3 398 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 HINFPQ9BQA5 517 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 ESYT1Q9BSJ8 1104 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 KRT23Q9C075 422 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 KLHL31Q9H511 634 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 NOD2Q9HC29 1040 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 ESYT2A0FGR8 921 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 HDLBPQ00341 1268 aaKnown RBP9.79□□□□□ -0.84
COL6A3-210ENST00000473258 BIRC3Q13489 604 aa9.79□□□□□ -0.84
COL6A3-210ENST00000473258 KCNB1Q14721 858 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms