RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PANX2Q96RD6 677 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 TRIM60Q495X7 471 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 RRAGAQ7L523 313 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 LRRC2Q9BYS8 371 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 CROCC2H7BZ55 1655 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 LRRC8BQ6P9F7 803 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 OTUD6AQ7L8S5 288 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 MAP7D3Q8IWC1 876 aa14.52□□□□□ -0.09
COL6A3-209ENST00000472056 JPH2Q9BR39 696 aaPredicted RBP14.52□□□□□ -0.09
COL6A3-209ENST00000472056 PGRMC1O00264 195 aaKnown RBP14.51□□□□□ -0.09
COL6A3-209ENST00000472056 MX2P20592 715 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 TRIM33Q9UPN9 1127 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 TCOF1Q13428 1488 aaKnown RBP14.51□□□□□ -0.09
COL6A3-209ENST00000472056 MYH7P12883 1935 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 KIAA0232Q92628 1395 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 TYW1BQ6NUM6 668 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 PPP1R13BQ96KQ4 1090 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 FMO2Q99518 471 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 GSTA1P08263 222 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 GSTA2P09210 222 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 SESN3P58005 492 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 STX1BP61266 288 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 EP400NLQ6ZTU2 488 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 TRIM56Q9BRZ2 755 aaKnown RBP14.51□□□□□ -0.09
COL6A3-209ENST00000472056 ARMCX3Q9UH62 379 aaPredicted RBP14.51□□□□□ -0.09
COL6A3-209ENST00000472056 PODXLO00592 558 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 ACTN1P12814 892 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 NPATQ14207 1427 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 HARSP12081 509 aaKnown RBP14.51□□□□□ -0.09
COL6A3-209ENST00000472056 LONP1P36776 959 aaKnown RBP14.51□□□□□ -0.09
COL6A3-209ENST00000472056 JADE1Q6IE81 842 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 TTC16Q8NEE8 873 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 SETDB2Q96T68 719 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 CCPG1Q9ULG6 757 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 FANCAO15360 1455 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 TAF11Q15544 211 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 TRIM31Q9BZY9 425 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 CD2APQ9Y5K6 639 aa14.51□□□□□ -0.09
COL6A3-209ENST00000472056 CTNND1O60716 968 aaKnown RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 GCNT3O95395 438 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 NEK2P51955 445 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 DHTKD1Q96HY7 919 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 PAIP2BQ9ULR5 123 aaKnown RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 EXOC5O00471 708 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 TSHZ3Q63HK5 1081 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 COPG1Q9Y678 874 aaKnown RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 LETM2Q2VYF4 491 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 TMED8Q6PL24 325 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 KIRREL3Q8IZU9 778 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 TTC1Q99614 292 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 SERPINB2P05120 415 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 PRPSAP1Q14558 356 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 HERC4Q5GLZ8 1057 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 GTPBP6O43824 516 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 STAM2O75886 525 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 NR1D1P20393 614 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 IGBP1P78318 339 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 MYOCDQ8IZQ8 938 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 KBTBD3Q8NAB2 608 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.5□□□□□ -0.094e-7■■■■■ 58.1
COL6A3-209ENST00000472056 POLR3CQ9BUI4 534 aaPredicted RBP14.5□□□□□ -0.09
COL6A3-209ENST00000472056 UBE4BO95155 1302 aa14.5□□□□□ -0.09
COL6A3-209ENST00000472056 RIOK1Q9BRS2 568 aaKnown RBP14.49□□□□□ -0.09
COL6A3-209ENST00000472056 TMEM60Q9H2L4 133 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 MRPL46Q9H2W6 279 aaKnown RBP14.49□□□□□ -0.09
COL6A3-209ENST00000472056 DONSONQ9NYP3 566 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 SCHIP1Q9P0W5 487 aaPredicted RBP14.49□□□□□ -0.09
COL6A3-209ENST00000472056 ATP1A2P50993 1020 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 KRT81Q14533 505 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 TEX12Q9BXU0 123 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 CCDC188H7C350 402 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 KRT4P19013 534 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 KRT26Q7Z3Y9 468 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 NOSTRINQ8IVI9 506 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 FBXO18Q8NFZ0 1043 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 CHGBP05060 677 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 GUCY2FP51841 1108 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 PPP2R5AQ15172 486 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 TEX9Q8N6V9 391 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 MGARPQ8TDB4 240 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 KIF2CQ99661 725 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 ARHGAP26Q9UNA1 814 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 EXOC3O60645 756 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 ADCY7P51828 1080 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 BEND3Q5T5X7 828 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 HOMEZQ8IX15 550 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 SNRKQ9NRH2 765 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 C1orf112Q9NSG2 853 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 ZNF518AQ6AHZ1 1483 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 VAMP4O75379 141 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 MKRN3Q13064 507 aaKnown RBP14.49□□□□□ -0.09
COL6A3-209ENST00000472056 C16orf87Q6PH81 154 aa14.49□□□□□ -0.09
COL6A3-209ENST00000472056 BACH1O14867 736 aa14.48□□□□□ -0.09
COL6A3-209ENST00000472056 SEMA3EO15041 775 aa14.48□□□□□ -0.09
COL6A3-209ENST00000472056 PHF8Q9UPP1 1060 aa14.48□□□□□ -0.09
COL6A3-209ENST00000472056 MCF2P10911 925 aa14.48□□□□□ -0.09
COL6A3-209ENST00000472056 GRAMD1AQ96CP6 724 aa14.48□□□□□ -0.09
COL6A3-209ENST00000472056 EYA3Q99504 573 aa14.48□□□□□ -0.09
COL6A3-209ENST00000472056 POLR3EQ9NVU0 708 aa14.48□□□□□ -0.09
COL6A3-209ENST00000472056 VGLL3A8MV65 326 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms