RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 UQCRHLA0A096LP55 91 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 SPDYE16A6NNV3 312 aaPredicted RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 B4DLN1 442 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 KLRF2D3W0D1 207 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 TNPO2O14787 897 aaKnown RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 ATP2A1O14983 1001 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 ZBTB43O43298 467 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 ST18O60284 1047 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 UQCRHP07919 91 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 SNHG28P0DPA3 235 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 BCRP11274 1271 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 PSMC4P43686 418 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 MRPL12P52815 198 aaKnown RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 SASS6Q6UVJ0 657 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 STOX1Q6ZVD7 989 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 KCTD1Q719H9 257 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 CTU1Q7Z7A3 348 aaKnown RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 CLEC10AQ8IUN9 316 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 RASEFQ8IZ41 740 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 FANCBQ8NB91 859 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 CHST13Q8NET6 341 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 MPHOSPH6Q99547 160 aaKnown RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 TEX13BQ9BXU2 312 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 SPATC1LQ9H0A9 340 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 ALDH8A1Q9H2A2 487 aaPredicted RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 GPCPD1Q9NPB8 672 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 PDRG1Q9NUG6 133 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 RBM27Q9P2N5 1060 aaKnown RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 NAP1L2Q9ULW6 460 aaPredicted RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 NOL7Q9UMY1 257 aaKnown RBP8.99□□□□□ -0.97
USP4-207ENST00000462673 ZKSCAN5Q9Y2L8 839 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 TACC3Q9Y6A5 838 aa8.99□□□□□ -0.97
USP4-207ENST00000462673 THSD7BQ9C0I4 1608 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 PALM3A6NDB9 673 aaPredicted RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 SH2B2O14492 632 aaPredicted RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 CD2BP2O95400 341 aaKnown RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 FCER1AP12319 257 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 AKAP17AQ02040 695 aaKnown RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 TROAPQ12815 778 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 KCTD2Q14681 263 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 ADCK5Q3MIX3 580 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 SYDE2Q5VT97 1194 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 WDR78Q5VTH9 848 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 MCTP1Q6DN14 999 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 CAVIN1Q6NZI2 390 aaKnown RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 Q6ZUG5 572 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 PLEKHH3Q7Z736 793 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 NCAPG2Q86XI2 1143 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 SMAP1Q8IYB5 467 aaPredicted RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 ZNF654Q8IZM8 581 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 ABRAQ8N0Z2 381 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 SAMD3Q8N6K7 520 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 SOCS4Q8WXH5 440 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 SYAP1Q96A49 352 aaPredicted RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 DDX11Q96FC9 970 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 ZNF274Q96GC6 653 aaPredicted RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 NUDT12Q9BQG2 462 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 LY9Q9HBG7 655 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 SLC38A10Q9HBR0 1119 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 SEC63Q9UGP8 760 aaKnown RBP8.98□□□□□ -0.97
USP4-207ENST00000462673 TSKSQ9UJT2 592 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 PRR12Q9ULL5 1215 aa8.98□□□□□ -0.97
USP4-207ENST00000462673 PHIPQ8WWQ0 1821 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 ICAM1P05362 532 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 CAPN2P17655 700 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 MCM2P49736 904 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 NEK4P51957 841 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 DGKZQ13574 1117 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 GRM4Q14833 912 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 KIAA1755Q5JYT7 1200 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 DPP9Q86TI2 863 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 MCF2L2Q86YR7 1114 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 RIOX2Q8IUF8 465 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 TEX2Q8IWB9 1127 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 CPXCR1Q8N123 301 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 RAET1EQ8TD07 263 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 ATG4CQ96DT6 458 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 RRP36Q96EU6 259 aaKnown RBP8.97□□□□□ -0.97
USP4-207ENST00000462673 TRIM47Q96LD4 638 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 NUP88Q99567 741 aaPredicted RBP8.97□□□□□ -0.97
USP4-207ENST00000462673 AMNQ9BXJ7 453 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 FOXD4L1Q9NU39 408 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 MAP3K20Q9NYL2 800 aaKnown RBP8.97□□□□□ -0.97
USP4-207ENST00000462673 R3HCC1Q9Y3T6 440 aaKnown RBP8.97□□□□□ -0.97
USP4-207ENST00000462673 TRIM17Q9Y577 477 aa8.97□□□□□ -0.97
USP4-207ENST00000462673 FRMPD2Q68DX3 1309 aaPredicted RBP8.97□□□□□ -0.97
USP4-207ENST00000462673 LAMA4Q16363 1823 aa8.96□□□□□ -0.97
USP4-207ENST00000462673 PNMA6FA0A0J9YX94 578 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 KLF18A0A0U1RQI7 1052 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 SLC15A5A6NIM6 579 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 CPLX1O14810 134 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 ZBTB5O15062 677 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 CDKL5O76039 1030 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 GOLGA8HP0CJ92 632 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 XRCC5P13010 732 aaKnown RBP8.96□□□□□ -0.98
USP4-207ENST00000462673 ERCC3P19447 782 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 RGS2P41220 211 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 METAP2P50579 478 aaKnown RBP eCLIP8.96□□□□□ -0.98
USP4-207ENST00000462673 EVCP57679 992 aa8.96□□□□□ -0.98
USP4-207ENST00000462673 ANTXR2P58335 489 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms