RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 RIPK4P57078 832 aa5.9□□□□□ -1.46
CSMD3-205ENST00000462254 ARSHQ5FYA8 562 aa5.9□□□□□ -1.46
CSMD3-205ENST00000462254 Q6ZS46 218 aa5.9□□□□□ -1.46
CSMD3-205ENST00000462254 NGEFQ8N5V2 710 aa5.9□□□□□ -1.46
CSMD3-205ENST00000462254 UBL7Q96S82 380 aaPredicted RBP5.9□□□□□ -1.46
CSMD3-205ENST00000462254 RUSC1Q9BVN2 902 aa5.9□□□□□ -1.46
CSMD3-205ENST00000462254 TMEM39AQ9NV64 488 aa5.9□□□□□ -1.46
CSMD3-205ENST00000462254 SNTG2Q9NY99 539 aa5.9□□□□□ -1.46
CSMD3-205ENST00000462254 GPN3Q9UHW5 284 aaPredicted RBP5.9□□□□□ -1.46
CSMD3-205ENST00000462254 SPATA31A1Q5TZJ5 1347 aa5.9□□□□□ -1.47
CSMD3-205ENST00000462254 MAP3K5Q99683 1374 aa5.9□□□□□ -1.47
CSMD3-205ENST00000462254 KDM6AO15550 1401 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-205ENST00000462254 TNS2Q63HR2 1409 aa5.9□□□□□ -1.47
CSMD3-205ENST00000462254 NHSQ6T4R5 1651 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 CDC45O75419 566 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 PAGE1O75459 146 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 CYP11A1P05108 521 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 TBX4P57082 545 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 EVA1CP58658 441 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 DCTN1Q14203 1278 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 RASA3Q14644 834 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 POU4F3Q15319 338 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 TAF7LQ5H9L4 462 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 MEI1Q5TIA1 1274 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 DZIP1LQ8IYY4 767 aaKnown RBP5.89□□□□□ -1.47
CSMD3-205ENST00000462254 RAPGEF4Q8WZA2 1011 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 PMM1Q92871 262 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 THUMPD2Q9BTF0 503 aaKnown RBP5.89□□□□□ -1.47
CSMD3-205ENST00000462254 TMPRSS13Q9BYE2 586 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 TRIM55Q9BYV6 548 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 ZC3H12CQ9C0D7 883 aaKnown RBP5.89□□□□□ -1.47
CSMD3-205ENST00000462254 ZFYVE1Q9HBF4 777 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 GEMIN8Q9NWZ8 242 aaKnown RBP5.89□□□□□ -1.47
CSMD3-205ENST00000462254 GABBR1Q9UBS5 961 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 STRIP2Q9ULQ0 834 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 G3BP2Q9UN86 482 aaKnown RBP5.89□□□□□ -1.47
CSMD3-205ENST00000462254 BTAF1O14981 1849 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 AFF2P51816 1311 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 SPATA31A5Q5VU36 1347 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 SPATA31A7Q8IWB4 1347 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 ATRNO75882 1429 aa5.89□□□□□ -1.47
CSMD3-205ENST00000462254 N4BP2Q86UW6 1770 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 TAF1LQ8IZX4 1826 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 MEGF11A6BM72 1044 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 ENC1O14682 589 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 KLF4O43474 513 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 CENPBP07199 599 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 FURINP09958 794 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 DRD2P14416 443 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 IL2RBP14784 551 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 SLFN5Q08AF3 891 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 RAB33AQ14088 237 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 PLEKHO1Q53GL0 409 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 MEX3CQ5U5Q3 659 aaKnown RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 RASIP1Q5U651 963 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 DUSP27Q5VZP5 1158 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 ZNF530Q6P9A1 599 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 ANKS3Q6ZW76 656 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 MCM10Q7L590 875 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 UNC5CLQ8IV45 518 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 WDR63Q8IWG1 891 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 TRMT2AQ8IZ69 625 aaKnown RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 DDX54Q8TDD1 881 aaKnown RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 WDR89Q96FK6 387 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 CCDC136Q96JN2 1154 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 NECAB3Q96P71 396 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-205ENST00000462254 DEPDC7Q96QD5 511 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 CORO1BQ9BR76 489 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 RNF208Q9H0X6 261 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 CEMIPQ8WUJ3 1361 aa5.88□□□□□ -1.47
CSMD3-205ENST00000462254 GNAT3A8MTJ3 354 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 CYP27B1O15528 508 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 CELA3AP09093 270 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 PHKG2P15735 406 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 CHMP4BP1P59074 171 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 PPP2R3AQ06190 1150 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 LMOD3Q0VAK6 560 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 VPS72Q15906 364 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 AMOTQ4VCS5 1084 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 AKAP4Q5JQC9 854 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 EXOSC6Q5RKV6 272 aaKnown RBP5.87□□□□□ -1.47
CSMD3-205ENST00000462254 MPRIPQ6WCQ1 1025 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 KIAA0907Q7Z7F0 614 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-205ENST00000462254 PDZD3Q86UT5 571 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 FMNL3Q8IVF7 1028 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 IL17REQ8NFR9 667 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 JDP2Q8WYK2 163 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 APPBP2Q92624 585 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 TP53INP1Q96A56 240 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 SPON2Q9BUD6 331 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 CCDC86Q9H6F5 360 aaKnown RBP5.87□□□□□ -1.47
CSMD3-205ENST00000462254 LGR6Q9HBX8 967 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 FANCLQ9NW38 375 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 PPM1HQ9ULR3 514 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 TTF2Q9UNY4 1162 aaKnown RBP5.87□□□□□ -1.47
CSMD3-205ENST00000462254 IL16Q14005 1332 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 CICQ96RK0 1608 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-205ENST00000462254 LY75O60449 1722 aa5.87□□□□□ -1.47
CSMD3-205ENST00000462254 COL5A3P25940 1745 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-205ENST00000462254 TJP1Q07157 1748 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms