RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 GCLCP48506 637 aaPredicted RBP11.78□□□□□ -0.52
UPF2-204ENST00000460569 SLC4A3P48751 1232 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 SSRP1Q08945 709 aaKnown RBP11.78□□□□□ -0.52
UPF2-204ENST00000460569 PLS1Q14651 629 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 QRICH1Q2TAL8 776 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 CPXCR1Q8N123 301 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 REPS2Q8NFH8 660 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 MTMR8Q96EF0 704 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 RNF26Q9BY78 433 aaPredicted RBP11.78□□□□□ -0.52
UPF2-204ENST00000460569 RAVER2Q9HCJ3 691 aaKnown RBP11.78□□□□□ -0.52
UPF2-204ENST00000460569 ADAMTS5Q9UNA0 930 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 RABGAP1Q9Y3P9 1069 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 ADGRA2Q96PE1 1338 aa11.78□□□□□ -0.52
UPF2-204ENST00000460569 PEX10O60683 326 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 TRPA1O75762 1119 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 CNMDO75829 334 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 HSP90AA1P07900 732 aaKnown RBP11.77□□□□□ -0.53
UPF2-204ENST00000460569 TAL1P17542 331 aaPredicted RBP11.77□□□□□ -0.53
UPF2-204ENST00000460569 CUL4AQ13619 759 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 TMEM132BQ14DG7 1078 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 POTEEQ6S8J3 1075 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 FBXO11Q86XK2 927 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 ANKRD13CQ8N6S4 541 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 DNAJC5GQ8N7S2 189 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 DDX11Q96FC9 970 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 LLPHQ9BRT6 129 aaKnown RBP11.77□□□□□ -0.53
UPF2-204ENST00000460569 TXNRD2Q9NNW7 524 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 RNF186Q9NXI6 227 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 BTBD7Q9P203 1132 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 RBM27Q9P2N5 1060 aaKnown RBP11.77□□□□□ -0.53
UPF2-204ENST00000460569 CPA4Q9UI42 421 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 CCPG1Q9ULG6 757 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 RBM19Q9Y4C8 960 aaKnown RBP11.77□□□□□ -0.53
UPF2-204ENST00000460569 V9GY48 417 aaPredicted RBP11.77□□□□□ -0.53
UPF2-204ENST00000460569 STK36Q9NRP7 1315 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 SMCHD1A6NHR9 2005 aa11.77□□□□□ -0.53
UPF2-204ENST00000460569 PLXNB2O15031 1838 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 MGAMO43451 1857 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 PNMA6FA0A0J9YX94 578 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 PRPF3O43395 683 aaKnown RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 TLR2O60603 784 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 PPP1R11O60927 126 aaPredicted RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 DEXIO95424 95 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 TBC1D8O95759 1140 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 ICAM1P05362 532 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 OAZ1P54368 228 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 ERVK-9P63128 1117 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 ERVK-24P63145 666 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 HMGN5P82970 282 aaKnown RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 MAP2K1Q02750 393 aaPredicted RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 FAM110CQ1W6H9 321 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 USH1GQ495M9 461 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 SNRNP48Q6IEG0 339 aaKnown RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 HEATR3Q7Z4Q2 680 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 GPKOWQ92917 476 aaPredicted RBP eCLIP11.76□□□□□ -0.538e-6■■■□□ 18.6
UPF2-204ENST00000460569 AGBL1Q96MI9 1066 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 BEGAINQ9BUH8 593 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 AMNQ9BXJ7 453 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 TEX13BQ9BXU2 312 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 SPATC1LQ9H0A9 340 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 FOXD4L1Q9NU39 408 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 ORC3Q9UBD5 711 aaPredicted RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 RBPJLQ9UBG7 517 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 ZNF214Q9UL59 606 aaPredicted RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.76□□□□□ -0.53
UPF2-204ENST00000460569 ZNF536O15090 1300 aa11.76□□□□□ -0.53
UPF2-204ENST00000460569 ZSWIM8A7E2V4 1837 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 ATP2A1O14983 1001 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 BCRP11274 1271 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 ALAS1P13196 640 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 SCG2P13521 617 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 STAT3P40763 770 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 CCNA1P78396 465 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 PKN1Q16512 942 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 PFKFB3Q16875 520 aaPredicted RBP11.75□□□□□ -0.53
UPF2-204ENST00000460569 WWC2Q6AWC2 1192 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 FAM184AQ8NB25 1140 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 GPRC5AQ8NFJ5 357 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 SMARCC2Q8TAQ2 1214 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 R3HDMLQ9H3Y0 253 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 HOMER2Q9NSB8 354 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 SAGE1Q9NXZ1 904 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 MORF4L1Q9UBU8 362 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 PNMA2Q9UL42 364 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 SMC3Q9UQE7 1217 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 ABCB11O95342 1321 aa11.75□□□□□ -0.53
UPF2-204ENST00000460569 hCG_1984214I3L0E3 225 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 GJB2P29033 226 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 COPB2P35606 906 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 FOSBP53539 338 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 TRAF1Q13077 416 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 WDR78Q5VTH9 848 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 C17orf99Q6UX52 265 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 RIOX2Q8IUF8 465 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 CCAR1Q8IX12 1150 aaKnown RBP11.74□□□□□ -0.53
UPF2-204ENST00000460569 ZNF713Q8N859 430 aaPredicted RBP11.74□□□□□ -0.53
UPF2-204ENST00000460569 WASF1Q92558 559 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 COA7Q96BR5 231 aa11.74□□□□□ -0.53
UPF2-204ENST00000460569 INTS4Q96HW7 963 aaKnown RBP11.74□□□□□ -0.53
UPF2-204ENST00000460569 AIFM3Q96NN9 605 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms