RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 COA7Q96BR5 231 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 C12orf42Q96LP6 360 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 TMEM106CQ9BVX2 250 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 SH2D4AQ9H788 454 aa12.71□□□□□ -0.37
SCN9A-205ENST00000454569 A0A0G2JLL6 359 aaPredicted RBP12.7□□□□□ -0.38
SCN9A-205ENST00000454569 VPS37CA5D8V6 355 aaPredicted RBP12.7□□□□□ -0.38
SCN9A-205ENST00000454569 WDR46O15213 610 aaKnown RBP12.7□□□□□ -0.38
SCN9A-205ENST00000454569 BRD1O95696 1058 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 NPY5RQ15761 445 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 QRICH1Q2TAL8 776 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 KRT40Q6A162 431 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 PRRT2Q7Z6L0 340 aaPredicted RBP12.7□□□□□ -0.38
SCN9A-205ENST00000454569 FERMT3Q86UX7 667 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 TRIM22Q8IYM9 498 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 RBM46Q8TBY0 533 aaKnown RBP12.7□□□□□ -0.38
SCN9A-205ENST00000454569 KIFC2Q96AC6 838 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 MS4A3Q96HJ5 214 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 LZTS2Q9BRK4 669 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 CHMP5Q9NZZ3 219 aa12.7□□□□□ -0.38
SCN9A-205ENST00000454569 C19orf67A6NJJ6 358 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 KIF28PB7ZC32 967 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 SCG2P13521 617 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 STAT2P52630 851 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 USP14P54578 494 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 IKQ13123 557 aaPredicted RBP12.69□□□□□ -0.38
SCN9A-205ENST00000454569 CDC37Q16543 378 aaPredicted RBP12.69□□□□□ -0.38
SCN9A-205ENST00000454569 NOM1Q5C9Z4 860 aaKnown RBP12.69□□□□□ -0.38
SCN9A-205ENST00000454569 GPAT2Q6NUI2 795 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 FAM173BQ6P4H8 233 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 GADL1Q6ZQY3 521 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 CATSPERGQ6ZRH7 1159 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 FBXO18Q8NFZ0 1043 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 OXER1Q8TDS5 423 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 LPAR1Q92633 364 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 C8orf76Q96K31 380 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 TANGO6Q9C0B7 1094 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 STXBP3O00186 592 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 CXCL11O14625 94 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 FOXD4L6Q3SYB3 417 aaPredicted RBP12.69□□□□□ -0.38
SCN9A-205ENST00000454569 SPRYD7Q5W111 196 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 FOXD4L3Q6VB84 417 aaPredicted RBP12.69□□□□□ -0.38
SCN9A-205ENST00000454569 ATG4CQ96DT6 458 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 RRP36Q96EU6 259 aaKnown RBP12.69□□□□□ -0.38
SCN9A-205ENST00000454569 TMOD4Q9NZQ9 345 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 FEM1BQ9UK73 627 aa12.69□□□□□ -0.38
SCN9A-205ENST00000454569 MYH7BA7E2Y1 1941 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 A0A0G2JMZ2 1700 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 PNMA6FA0A0J9YX94 578 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 ZBTB5O15062 677 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 PLA2G6O60733 806 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 FLOT1O75955 427 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 ZSCAN22P10073 491 aaPredicted RBP12.68□□□□□ -0.38
SCN9A-205ENST00000454569 AKAP17AQ02040 695 aaKnown RBP12.68□□□□□ -0.38
SCN9A-205ENST00000454569 CCDC174Q6PII3 467 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 HEATR3Q7Z4Q2 680 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 RASAL3Q86YV0 1011 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 ZIC5Q96T25 663 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 PTPN18Q99952 460 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 PHF20Q9BVI0 1012 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 TLL2Q9Y6L7 1015 aa12.68□□□□□ -0.38
SCN9A-205ENST00000454569 ZNFX1Q9P2E3 1918 aaKnown RBP12.68□□□□□ -0.38
SCN9A-205ENST00000454569 ZNF536O15090 1300 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 FAM205CA6NFA0 338 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 UNCXA6NJT0 531 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 FAM155AB1AL88 458 aaPredicted RBP12.67□□□□□ -0.38
SCN9A-205ENST00000454569 ZNF157P51786 506 aaPredicted RBP12.67□□□□□ -0.38
SCN9A-205ENST00000454569 RESTQ13127 1097 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 E2F4Q16254 413 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 EARS2Q5JPH6 523 aaKnown RBP12.67□□□□□ -0.38
SCN9A-205ENST00000454569 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.67□□□□□ -0.38
SCN9A-205ENST00000454569 CHURC1Q8WUH1 139 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 BRI3BPQ8WY22 251 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 TNPO1Q92973 898 aaKnown RBP12.67□□□□□ -0.38
SCN9A-205ENST00000454569 AGBL1Q96MI9 1066 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 P2RX7Q99572 595 aaKnown RBP12.67□□□□□ -0.38
SCN9A-205ENST00000454569 SLF1Q9BQI6 1058 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 RANBP17Q9H2T7 1088 aaKnown RBP12.67□□□□□ -0.38
SCN9A-205ENST00000454569 BARHL2Q9NY43 387 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 PPP1R9AQ9ULJ8 1098 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 PCNTO95613 3336 aa12.67□□□□□ -0.38
SCN9A-205ENST00000454569 BTBD18B2RXH4 712 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 OPLAHO14841 1288 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 F13A1P00488 732 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 MMP1P03956 469 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 KIF23Q02241 960 aaPredicted RBP12.66□□□□□ -0.38
SCN9A-205ENST00000454569 NR5A1Q13285 461 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 USH1GQ495M9 461 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 FAM160B2Q86V87 743 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 PRPF38AQ8NAV1 312 aaKnown RBP12.66□□□□□ -0.38
SCN9A-205ENST00000454569 REPS2Q8NFH8 660 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 TBC1D5Q92609 795 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 R3HDMLQ9H3Y0 253 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 ADAMTS5Q9UNA0 930 aa12.66□□□□□ -0.38
SCN9A-205ENST00000454569 LCTP09848 1927 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 TMEM88BA6NKF7 163 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 SPDYE16A6NNV3 312 aaPredicted RBP12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L15C9J2P7 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L13C9JLJ4 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L11C9JVI0 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L18D6R9N7 530 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms