RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 XPNPEP3Q9NQH7 507 aa21.19■□□□□ 0.98
SQSTM1-204ENST00000453046 AKR1A1P14550 325 aa21.18■□□□□ 0.98
SQSTM1-204ENST00000453046 TAL1P17542 331 aaPredicted RBP21.18■□□□□ 0.98
SQSTM1-204ENST00000453046 MAGEA10P43363 369 aaPredicted RBP21.18■□□□□ 0.98
SQSTM1-204ENST00000453046 ACAD9Q9H845 621 aa21.18■□□□□ 0.98
SQSTM1-204ENST00000453046 PLA2G6O60733 806 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 CHMLP26374 656 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 BMP8BP34820 402 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 LRRC41Q15345 812 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 AKNAD1Q5T1N1 836 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 CCDC174Q6PII3 467 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 RNF180Q86T96 592 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 DCAF4Q8WV16 495 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 AGBL1Q96MI9 1066 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 RNF41Q9H4P4 317 aaPredicted RBP21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 PRKAG2Q9UGJ0 569 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 ZHX1Q9UKY1 873 aaPredicted RBP21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 SYNGAP1Q96PV0 1343 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 PLXNA1Q9UIW2 1896 aa21.17■□□□□ 0.98
SQSTM1-204ENST00000453046 DNAJC25-GNG10A0A024R161 153 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 ZNF213O14771 459 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 ZNF865P0CJ78 1059 aaPredicted RBP21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 TOP1P11387 765 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 PCP11498 1178 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 ADCYAP1R1P41586 468 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 RTP1P59025 263 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.16■□□□□ 0.981e-6■■□□□ 14.4
SQSTM1-204ENST00000453046 ZNF467Q7Z7K2 595 aaPredicted RBP21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 FERMT2Q96AC1 680 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 UBE2OQ9C0C9 1292 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 RNF146Q9NTX7 359 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 PRR12Q9ULL5 1215 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 ATP11BQ9Y2G3 1177 aa21.16■□□□□ 0.98
SQSTM1-204ENST00000453046 RAD50Q92878 1312 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 ALAS1P13196 640 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 NOVP48745 357 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 SNAP25P60880 206 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 TKFCQ3LXA3 575 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 MAMDC4Q6UXC1 1216 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 SLC39A5Q6ZMH5 540 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 RASGRP2Q7LDG7 609 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 TRERF1Q96PN7 1200 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 TMEM47Q9BQJ4 181 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 TCP11L1Q9NUJ3 509 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 FAM184BQ9ULE4 1060 aa21.15■□□□□ 0.98
SQSTM1-204ENST00000453046 ZNF536O15090 1300 aa21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 POTEB2H3BUK9 544 aa21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 SNAI1O95863 264 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 PGK1P00558 417 aa21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 MDM2Q00987 491 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 RUFY2Q8WXA3 655 aa21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 ESR2Q92731 530 aa21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 LBHD1Q9BQE6 289 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 UPF2Q9HAU5 1272 aaKnown RBP21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 TSHZ2Q9NRE2 1034 aa21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 DNAH12Q6ZR08 3092 aa21.14■□□□□ 0.97
SQSTM1-204ENST00000453046 SMCHD1A6NHR9 2005 aa21.13■□□□□ 0.97
SQSTM1-204ENST00000453046 ACVR2BQ13705 512 aa21.13■□□□□ 0.97
SQSTM1-204ENST00000453046 TBC1D10CQ8IV04 446 aa21.13■□□□□ 0.97
SQSTM1-204ENST00000453046 LENG1Q96BZ8 264 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-204ENST00000453046 ESYT1Q9BSJ8 1104 aa21.13■□□□□ 0.97
SQSTM1-204ENST00000453046 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-204ENST00000453046 FRMPD2Q68DX3 1309 aaPredicted RBP21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 SLC16A2P36021 539 aa21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 CNTN2Q02246 1040 aa21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 ARMCX2Q7L311 632 aa21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 TTC14Q96N46 770 aa21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 ABHD16BQ9H3Z7 469 aa21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 GPCPD1Q9NPB8 672 aa21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 A1CFQ9NQ94 594 aaKnown RBP21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 CCPG1Q9ULG6 757 aa21.12■□□□□ 0.97
SQSTM1-204ENST00000453046 REC8O95072 547 aa21.11■□□□□ 0.97
SQSTM1-204ENST00000453046 SYDE2Q5VT97 1194 aa21.11■□□□□ 0.97
SQSTM1-204ENST00000453046 TTBK2Q6IQ55 1244 aa21.11■□□□□ 0.97
SQSTM1-204ENST00000453046 CCDC144CPQ8IYA2 1237 aa21.11■□□□□ 0.97
SQSTM1-204ENST00000453046 TDHQ8IZJ6 230 aa21.11■□□□□ 0.97
SQSTM1-204ENST00000453046 PRDM5Q9NQX1 630 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-204ENST00000453046 PHF24Q9UPV7 400 aa21.11■□□□□ 0.97
SQSTM1-204ENST00000453046 NEDD4P46934 1319 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 ICAM1P05362 532 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 IMMTQ16891 758 aaKnown RBP21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 TRIM60Q495X7 471 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 NSMFQ6X4W1 530 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 FGD4Q96M96 766 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 ZKSCAN3Q9BRR0 538 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 DSCC1Q9BVC3 393 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 SPC25Q9HBM1 224 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 CTNNA3Q9UI47 895 aa21.1■□□□□ 0.97
SQSTM1-204ENST00000453046 SZT2Q5T011 3432 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 ASB14A6NK59 587 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 SGSM2O43147 1006 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 ADAMTS4O75173 837 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 DUSP11O75319 330 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 SEC24BO95487 1268 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 PDHBP11177 359 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 NT5C2P49902 561 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 CCDC178Q5BJE1 867 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 MUM1L1Q5H9M0 696 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 BTNL9Q6UXG8 535 aa21.09■□□□□ 0.97
SQSTM1-204ENST00000453046 IQCA1Q86XH1 822 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms