RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 GJA9P57773 515 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 TKFCQ3LXA3 575 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 TSHZ3Q63HK5 1081 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 TMEM199Q8N511 208 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 STAG1Q8WVM7 1258 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 GMCL1Q96IK5 515 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 FSD1Q9BTV5 496 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 COL25A1Q9BXS0 654 aaPredicted RBP15.78■□□□□ 0.12
HMGB3-204ENST00000448905 ACAD9Q9H845 621 aa15.78■□□□□ 0.12
HMGB3-204ENST00000448905 LAMA2P24043 3122 aaKnown RBP15.78■□□□□ 0.12
HMGB3-204ENST00000448905 M0R2C6 588 aa15.77■□□□□ 0.12
HMGB3-204ENST00000448905 ITGB8P26012 769 aa15.77■□□□□ 0.12
HMGB3-204ENST00000448905 PPARAQ07869 468 aa15.77■□□□□ 0.12
HMGB3-204ENST00000448905 CCSAPQ6IQ19 270 aaPredicted RBP15.77■□□□□ 0.12
HMGB3-204ENST00000448905 MFSD5Q6N075 450 aa15.77■□□□□ 0.12
HMGB3-204ENST00000448905 ARMCX2Q7L311 632 aa15.77■□□□□ 0.12
HMGB3-204ENST00000448905 LRRC47Q8N1G4 583 aaKnown RBP15.77■□□□□ 0.12
HMGB3-204ENST00000448905 MAFAQ8NHW3 353 aaPredicted RBP15.77■□□□□ 0.12
HMGB3-204ENST00000448905 LENG1Q96BZ8 264 aaPredicted RBP15.77■□□□□ 0.12
HMGB3-204ENST00000448905 EPB41L4AQ9HCS5 686 aaPredicted RBP15.77■□□□□ 0.12
HMGB3-204ENST00000448905 HOMER2Q9NSB8 354 aa15.77■□□□□ 0.12
HMGB3-204ENST00000448905 STX8Q9UNK0 236 aa15.77■□□□□ 0.12
HMGB3-204ENST00000448905 A0A0U1RQG5 324 aaPredicted RBP15.76■□□□□ 0.11
HMGB3-204ENST00000448905 TSPY2A6NKD2 308 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 ARVCFO00192 962 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 ZEB2O60315 1214 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 PLA2G6O60733 806 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 CABYRO75952 493 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 FOSL2P15408 326 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 MCCP23508 829 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 CDK7P50613 346 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 TNFAIP2Q03169 654 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 PPIGQ13427 754 aaKnown RBP eCLIP15.76■□□□□ 0.11
HMGB3-204ENST00000448905 RCSD1Q6JBY9 416 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 CCDC129Q6ZRS4 1044 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 CCDC144CPQ8IYA2 1237 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 SEZ6LQ9BYH1 1024 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 AP5M1Q9H0R1 490 aa15.76■□□□□ 0.11
HMGB3-204ENST00000448905 RLFQ13129 1914 aa15.75■□□□□ 0.11
HMGB3-204ENST00000448905 EPHB4P54760 987 aa15.75■□□□□ 0.11
HMGB3-204ENST00000448905 ZMYM1Q5SVZ6 1142 aa15.75■□□□□ 0.11
HMGB3-204ENST00000448905 IQSEC1Q6DN90 963 aa15.75■□□□□ 0.11
HMGB3-204ENST00000448905 MYLIPQ8WY64 445 aa15.75■□□□□ 0.11
HMGB3-204ENST00000448905 TRERF1Q96PN7 1200 aa15.75■□□□□ 0.11
HMGB3-204ENST00000448905 UPF3AQ9H1J1 476 aaKnown RBP15.75■□□□□ 0.11
HMGB3-204ENST00000448905 LTBP2Q14767 1821 aa15.75■□□□□ 0.11
HMGB3-204ENST00000448905 UNC80Q8N2C7 3258 aa15.74■□□□□ 0.11
HMGB3-204ENST00000448905 ZNFX1Q9P2E3 1918 aaKnown RBP15.74■□□□□ 0.11
HMGB3-204ENST00000448905 NAV1Q8NEY1 1877 aa15.74■□□□□ 0.11
HMGB3-204ENST00000448905 ALAS1P13196 640 aa15.74■□□□□ 0.11
HMGB3-204ENST00000448905 CNTN2Q02246 1040 aa15.74■□□□□ 0.11
HMGB3-204ENST00000448905 SYMPKQ92797 1274 aaKnown RBP15.74■□□□□ 0.11
HMGB3-204ENST00000448905 AGBL1Q96MI9 1066 aa15.74■□□□□ 0.11
HMGB3-204ENST00000448905 SEC62Q99442 399 aaKnown RBP15.74■□□□□ 0.11
HMGB3-204ENST00000448905 MTIF3Q9H2K0 278 aaKnown RBP15.74■□□□□ 0.11
HMGB3-204ENST00000448905 TTYH1Q9H313 450 aaPredicted RBP15.74■□□□□ 0.11
HMGB3-204ENST00000448905 RNF146Q9NTX7 359 aa15.74■□□□□ 0.11
HMGB3-204ENST00000448905 SMCHD1A6NHR9 2005 aa15.73■□□□□ 0.11
HMGB3-204ENST00000448905 RANBP6O60518 1105 aaKnown RBP15.73■□□□□ 0.11
HMGB3-204ENST00000448905 MX1P20591 662 aa15.73■□□□□ 0.11
HMGB3-204ENST00000448905 NKX3-2P78367 333 aa15.73■□□□□ 0.11
HMGB3-204ENST00000448905 FAM133AQ8N9E0 248 aa15.73■□□□□ 0.11
HMGB3-204ENST00000448905 A1CFQ9NQ94 594 aaKnown RBP15.73■□□□□ 0.11
HMGB3-204ENST00000448905 TBX21Q9UL17 535 aa15.73■□□□□ 0.11
HMGB3-204ENST00000448905 ZNF236Q9UL36 1845 aa15.73■□□□□ 0.11
HMGB3-204ENST00000448905 MYADML2A6NDP7 307 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 DYNC1LI2O43237 492 aaPredicted RBP15.72■□□□□ 0.11
HMGB3-204ENST00000448905 DNAJB2P25686 324 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 PSRC1Q6PGN9 363 aaPredicted RBP15.72■□□□□ 0.11
HMGB3-204ENST00000448905 KCTD1Q719H9 257 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 PI4K2BQ8TCG2 481 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 TIFAQ96CG3 184 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 EVI5LQ96CN4 794 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 ZNF576Q9H609 170 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 PNMA2Q9UL42 364 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 Q9Y3F1 56 aa15.72■□□□□ 0.11
HMGB3-204ENST00000448905 CSF2RAP15509 400 aa15.71■□□□□ 0.11
HMGB3-204ENST00000448905 CHMP4CQ96CF2 233 aa15.71■□□□□ 0.11
HMGB3-204ENST00000448905 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.71■□□□□ 0.11
HMGB3-204ENST00000448905 TOMM22Q9NS69 142 aa15.71■□□□□ 0.11
HMGB3-204ENST00000448905 ADD3Q9UEY8 706 aaKnown RBP15.71■□□□□ 0.11
HMGB3-204ENST00000448905 CCPG1Q9ULG6 757 aa15.71■□□□□ 0.11
HMGB3-204ENST00000448905 PRR12Q9ULL5 1215 aa15.71■□□□□ 0.11
HMGB3-204ENST00000448905 BAZ2AQ9UIF9 1905 aaKnown RBP15.7■□□□□ 0.1
HMGB3-204ENST00000448905 EYSQ5T1H1 3165 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 SOWAHBA6NEL2 793 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 FGBP02675 491 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 BEX3Q00994 111 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 CTDSPL2Q05D32 466 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 ITGA7Q13683 1181 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 GRIN2CQ14957 1233 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 FSCN1Q16658 493 aaKnown RBP15.7■□□□□ 0.1
HMGB3-204ENST00000448905 TMEM240Q5SV17 173 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 ANKRD45Q5TZF3 282 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 CXCL17Q6UXB2 119 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 NSMFQ6X4W1 530 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 ZNF365Q70YC5 407 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 TLK2Q86UE8 772 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 TICAM2Q86XR7 235 aa15.7■□□□□ 0.1
HMGB3-204ENST00000448905 FAM126BQ8IXS8 530 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms