RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, human

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH6-204	ENST00000445503	FANCG	O15287	622 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	BUB1	O43683	1085 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	ATP1A1	P05023	1023 aa	Known RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	VEGFA	P15692	232 aa	Predicted RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	MAGEA1	P43355	309 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	ATP2C1	P98194	919 aa	Predicted RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	STAG2	Q8N3U4	1231 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	SLC44A5	Q8NCS7	719 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	FAM76A	Q8TAV0	307 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	RIN2	Q8WYP3	895 aa	Predicted RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	TAF4B	Q92750	862 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	TUBB	P07437	444 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	RSRC2	Q7L4I2	434 aa	Known RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	MICALL1	Q8N3F8	863 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	LUC7L	Q9NQ29	371 aa	Known RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	XDH	P47989	1333 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	MED1	Q15648	1581 aa	Predicted RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	GOLGA6C	A6NDK9	693 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	GOLGA6B	A6NDN3	693 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	SMCO2	A6NFE2	343 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	ZNF185	O15231	689 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	GOLGA6D	P0CG33	693 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	SLC7A5	Q01650	507 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	EVX2	Q03828	476 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	NKX1-1	Q15270	411 aa	Predicted RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	PKN1	Q16512	942 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	ODF2	Q5BJF6	829 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	TCERG1L	Q5VWI1	586 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	SV2B	Q7L1I2	683 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	CELF1	Q92879	486 aa	Known RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	DISC1	Q9NRI5	854 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	GOLGA6A	Q9NYA3	693 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	LRWD1	Q9UFC0	647 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	RRP15	Q9Y3B9	282 aa	Known RBP	13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	PNPLA7	Q6ZV29	1317 aa		13.25	□□□□□ -0.29
MSH6-204	ENST00000445503	KLRF2	D3W0D1	207 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	TRAF5	O00463	557 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	FGFR2	P21802	821 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	KRT26	Q7Z3Y9	468 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	RRP36	Q96EU6	259 aa	Known RBP	13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	GPCPD1	Q9NPB8	672 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	KDM3B	Q7LBC6	1761 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	PLCG1	P19174	1290 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	NONO	Q15233	471 aa	Known RBP eCLIP	13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	LRRC41	Q15345	812 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	DIXDC1	Q155Q3	683 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	MAATS1	Q7Z4T9	603 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	ZNF526	Q8TF50	670 aa	Predicted RBP	13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	MED15	Q96RN5	788 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	ZNF287	Q9HBT7	754 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	AGPAT5	Q9NUQ2	364 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	TMCO5B	A8MYB1	307 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	HSF2BP	O75031	334 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	KIAA0754	O94854	1291 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	FGFR1OP	O95684	399 aa	Known RBP	13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	KLK7	P49862	253 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	NELFCD	Q8IXH7	590 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	ZNF34	Q8IZ26	560 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	MMS19	Q96T76	1030 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	RAB34	Q9BZG1	259 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	PCDHA4	Q9UN74	947 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	RIC1	Q4ADV7	1423 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	FAM237A	A0A1B0GTK4	181 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	UBE4A	Q14139	1066 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	HOMEZ	Q8IX15	550 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	FAM71B	Q8TC56	605 aa		13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	SEPT11	Q9NVA2	429 aa	Known RBP	13.24	□□□□□ -0.29
MSH6-204	ENST00000445503	MYO1C	O00159	1063 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	SEMA3E	O15041	775 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	TROAP	Q12815	778 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	SLC4A9	Q96Q91	983 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	ANKZF1	Q9H8Y5	726 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	GOLGA6L10	A6NI86	522 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	BEND6	Q5SZJ8	279 aa	Predicted RBP	13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	KRT79	Q5XKE5	535 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	GPR101	Q96P66	508 aa	Predicted RBP	13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	C6orf229	H3BNL8	230 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	MOCS3	O95396	460 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	GNA11	P29992	359 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	TRAPPC10	P48553	1259 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	SEC23A	Q15436	765 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	PFKFB3	Q16875	520 aa	Predicted RBP	13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	RNF187	Q5TA31	235 aa	Predicted RBP	13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	NUP58	Q9BVL2	599 aa		13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	LIMA1	Q9UHB6	759 aa	Known RBP	13.23	□□□□□ -0.29
MSH6-204	ENST00000445503	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	LGALS16	A8MUM7	142 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	RNF225	M0QZC1	329 aa	Predicted RBP	13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	OR52Z1	P0C646	297 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	RAPGEF1	Q13905	1077 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	CNNM4	Q6P4Q7	775 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	USP17L2	Q6R6M4	530 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	P2RX5	Q93086	422 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	TMEM60	Q9H2L4	133 aa		13.22	□□□□□ -0.29
MSH6-204	ENST00000445503	MYO1A	Q9UBC5	1043 aa		13.22	□□□□□ -0.29

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