RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 FANCBQ8NB91 859 aa20.03■□□□□ 0.8
LIME1-202ENST00000444951 DPF3Q92784 378 aa20.03■□□□□ 0.8
LIME1-202ENST00000444951 ZNF274Q96GC6 653 aaPredicted RBP20.03■□□□□ 0.8
LIME1-202ENST00000444951 DEFB118Q96PH6 123 aa20.03■□□□□ 0.8
LIME1-202ENST00000444951 SLKQ9H2G2 1235 aaPredicted RBP20.03■□□□□ 0.8
LIME1-202ENST00000444951 CPVLQ9H3G5 476 aa20.03■□□□□ 0.8
LIME1-202ENST00000444951 PAK6Q9NQU5 681 aaPredicted RBP20.03■□□□□ 0.8
LIME1-202ENST00000444951 ALPK3Q96L96 1907 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 HOXA7P31268 230 aaPredicted RBP20.02■□□□□ 0.8
LIME1-202ENST00000444951 KIF5BP33176 963 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 SLC16A2P36021 539 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 IRX3P78415 501 aaPredicted RBP20.02■□□□□ 0.8
LIME1-202ENST00000444951 ME3Q16798 604 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 CMTR1Q8N1G2 835 aaKnown RBP20.02■□□□□ 0.8
LIME1-202ENST00000444951 CCDC82Q8N4S0 544 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 UBA5Q9GZZ9 404 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 FBXO28Q9NVF7 368 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 MAD2L2Q9UI95 211 aa20.02■□□□□ 0.8
LIME1-202ENST00000444951 USP17L15C9J2P7 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L13C9JLJ4 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L11C9JVI0 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L18D6R9N7 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L22D6RA61 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L17D6RBQ6 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L19D6RCP7 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L20D6RJB6 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 DHX16O60231 1041 aaKnown RBP20.01■□□□□ 0.79
LIME1-202ENST00000444951 FLOT1O75955 427 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 SNHG28P0DPA3 235 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 EVCP57679 992 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 HERVK_113P62684 666 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 USP17L24Q0WX57 530 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 ASPRV1Q53RT3 343 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 CHRDL2Q6WN34 429 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 TSHZ2Q9NRE2 1034 aa20.01■□□□□ 0.79
LIME1-202ENST00000444951 KLRF2D3W0D1 207 aa20■□□□□ 0.79
LIME1-202ENST00000444951 DTNBO60941 627 aa20■□□□□ 0.79
LIME1-202ENST00000444951 PPFIA3O75145 1194 aa20■□□□□ 0.79
LIME1-202ENST00000444951 PLEKHA8P1O95397 391 aa20■□□□□ 0.79
LIME1-202ENST00000444951 CDC27P30260 824 aa20■□□□□ 0.79
LIME1-202ENST00000444951 ADD1P35611 737 aaKnown RBP20■□□□□ 0.79
LIME1-202ENST00000444951 GPATCH4Q5T3I0 446 aaKnown RBP20■□□□□ 0.79
LIME1-202ENST00000444951 PIBF1Q8WXW3 757 aa20■□□□□ 0.79
LIME1-202ENST00000444951 KIFC2Q96AC6 838 aa20■□□□□ 0.79
LIME1-202ENST00000444951 ZSCAN31Q96LW9 406 aaPredicted RBP20■□□□□ 0.79
LIME1-202ENST00000444951 CRISPLD2Q9H0B8 497 aa20■□□□□ 0.79
LIME1-202ENST00000444951 XRN2Q9H0D6 950 aaKnown RBP eCLIP20■□□□□ 0.794e-7■■■■■ 54.9
LIME1-202ENST00000444951 VAT1LQ9HCJ6 419 aa20■□□□□ 0.79
LIME1-202ENST00000444951 RBPJLQ9UBG7 517 aa20■□□□□ 0.79
LIME1-202ENST00000444951 PALM3A6NDB9 673 aaPredicted RBP19.99■□□□□ 0.79
LIME1-202ENST00000444951 PFKFB2O60825 505 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 TFRCP02786 760 aaKnown RBP19.99■□□□□ 0.79
LIME1-202ENST00000444951 MCM2P49736 904 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 STAT2P52630 851 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 SNAP25P60880 206 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 SCRN1Q12765 414 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 Q3C1V9 767 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 CATSPERGQ6ZRH7 1159 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 CCDC83Q8IWF9 413 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 HSCBQ8IWL3 235 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 IL27Q8NEV9 243 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 DIS3LQ8TF46 1054 aaKnown RBP19.99■□□□□ 0.79
LIME1-202ENST00000444951 TRIB2Q92519 343 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 MAP3K14Q99558 947 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 RBM28Q9NW13 759 aaKnown RBP19.99■□□□□ 0.79
LIME1-202ENST00000444951 FEM1BQ9UK73 627 aa19.99■□□□□ 0.79
LIME1-202ENST00000444951 CPLX1O14810 134 aa19.98■□□□□ 0.79
LIME1-202ENST00000444951 HMGCRP04035 888 aa19.98■□□□□ 0.79
LIME1-202ENST00000444951 CHURC1Q8WUH1 139 aa19.98■□□□□ 0.79
LIME1-202ENST00000444951 TMX3Q96JJ7 454 aa19.98■□□□□ 0.79
LIME1-202ENST00000444951 SLF1Q9BQI6 1058 aa19.98■□□□□ 0.79
LIME1-202ENST00000444951 HTATIP2Q9BUP3 242 aa19.98■□□□□ 0.79
LIME1-202ENST00000444951 PORCNQ9H237 461 aa19.98■□□□□ 0.79
LIME1-202ENST00000444951 FAM217BQ9NTX9 383 aaPredicted RBP19.98■□□□□ 0.79
LIME1-202ENST00000444951 CCDC196A0A1B0GTZ2 297 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 CYP2B6P20813 491 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 GNAQP50148 359 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 RCAN1P53805 252 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 SYDE2Q5VT97 1194 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 TMTC3Q6ZXV5 915 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 FAM160B2Q86V87 743 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 SRBD1Q8N5C6 995 aaKnown RBP19.97■□□□□ 0.79
LIME1-202ENST00000444951 GPRC5AQ8NFJ5 357 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 PAWRQ96IZ0 340 aaKnown RBP19.97■□□□□ 0.79
LIME1-202ENST00000444951 PAGR1Q9BTK6 254 aa19.97■□□□□ 0.79
LIME1-202ENST00000444951 SH2B1Q9NRF2 756 aaPredicted RBP19.97■□□□□ 0.79
LIME1-202ENST00000444951 RBM27Q9P2N5 1060 aaKnown RBP19.97■□□□□ 0.79
LIME1-202ENST00000444951 CNMDO75829 334 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 ERVK-9P63128 1117 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 ERVK-24P63145 666 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 COG2Q14746 738 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 GTF3C6Q969F1 213 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 SNX21Q969T3 373 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 ATG4CQ96DT6 458 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 PRO3102Q9H379 93 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 PRR12Q9ULL5 1215 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 CTDP1Q9Y5B0 961 aaPredicted RBP19.96■□□□□ 0.79
LIME1-202ENST00000444951 LAMA3Q16787 3333 aa19.96■□□□□ 0.79
LIME1-202ENST00000444951 hCG_1642624A0A1W2PR95 340 aa19.95■□□□□ 0.78
LIME1-202ENST00000444951 K7ELQ4 463 aaPredicted RBP19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms