RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 MAP2K1Q02750 393 aaPredicted RBP18.27■□□□□ 0.52
USP40-206ENST00000443711 TRAF1Q13077 416 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 CUL4AQ13619 759 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 QRICH1Q2TAL8 776 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 CCDC174Q6PII3 467 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 HOMER1Q86YM7 354 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 NSUN7Q8NE18 718 aaKnown RBP18.27■□□□□ 0.52
USP40-206ENST00000443711 SLC26A6Q9BXS9 759 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 RBPJLQ9UBG7 517 aa18.27■□□□□ 0.52
USP40-206ENST00000443711 RBM19Q9Y4C8 960 aaKnown RBP18.27■□□□□ 0.52
USP40-206ENST00000443711 TLR2O60603 784 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 OAZ1P54368 228 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 CRHR2Q13324 411 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 CPXCR1Q8N123 301 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 REPS2Q8NFH8 660 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 PAGR1Q9BTK6 254 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 RNF186Q9NXI6 227 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.26■□□□□ 0.51
USP40-206ENST00000443711 A0A0G2JMZ2 1700 aa18.26■□□□□ 0.51
USP40-206ENST00000443711 STK36Q9NRP7 1315 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 hCG_1642624A0A1W2PR95 340 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 PTPDC1A2A3K4 754 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 ATP2A1O14983 1001 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 PPFIA3O75145 1194 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 TRPA1O75762 1119 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 ICAM1P05362 532 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 PLS1Q14651 629 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 TMEM132BQ14DG7 1078 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 POTEEQ6S8J3 1075 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 FBXO11Q86XK2 927 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 SMARCC2Q8TAQ2 1214 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 AMNQ9BXJ7 453 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 CFHR5Q9BXR6 569 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 RAVER2Q9HCJ3 691 aaKnown RBP18.25■□□□□ 0.51
USP40-206ENST00000443711 BTBD7Q9P203 1132 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 ORC3Q9UBD5 711 aaPredicted RBP18.25■□□□□ 0.51
USP40-206ENST00000443711 MORF4L1Q9UBU8 362 aa18.25■□□□□ 0.51
USP40-206ENST00000443711 ADGRA2Q96PE1 1338 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 CNMDO75829 334 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 DEXIO95424 95 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 STAT3P40763 770 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 HMGN5P82970 282 aaKnown RBP18.24■□□□□ 0.51
USP40-206ENST00000443711 PFKFB3Q16875 520 aaPredicted RBP18.24■□□□□ 0.51
USP40-206ENST00000443711 ANKRD13CQ8N6S4 541 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 GPRC5AQ8NFJ5 357 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 WASF1Q92558 559 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 INTS4Q96HW7 963 aaKnown RBP18.24■□□□□ 0.51
USP40-206ENST00000443711 BEGAINQ9BUH8 593 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 TEX13BQ9BXU2 312 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 TXNRD2Q9NNW7 524 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 CPA4Q9UI42 421 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 ZNF214Q9UL59 606 aaPredicted RBP18.24■□□□□ 0.51
USP40-206ENST00000443711 CCPG1Q9ULG6 757 aa18.24■□□□□ 0.51
USP40-206ENST00000443711 ZNF536O15090 1300 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 SMCHD1A6NHR9 2005 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 hCG_1984214I3L0E3 225 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 JAK2O60674 1132 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 HSP90AA1P07900 732 aaKnown RBP18.23■□□□□ 0.51
USP40-206ENST00000443711 SCG2P13521 617 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 ERVK-9P63128 1117 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 ERVK-24P63145 666 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 CCNA1P78396 465 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 PKN1Q16512 942 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 FAM110CQ1W6H9 321 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 SNRNP48Q6IEG0 339 aaKnown RBP18.23■□□□□ 0.51
USP40-206ENST00000443711 C17orf99Q6UX52 265 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 ZNF713Q8N859 430 aaPredicted RBP18.23■□□□□ 0.51
USP40-206ENST00000443711 DDX11Q96FC9 970 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 AGBL1Q96MI9 1066 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 SPATC1LQ9H0A9 340 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 SAGE1Q9NXZ1 904 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 SMC3Q9UQE7 1217 aa18.23■□□□□ 0.51
USP40-206ENST00000443711 PEX10O60683 326 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 PPP1R11O60927 126 aaPredicted RBP18.22■□□□□ 0.51
USP40-206ENST00000443711 DTNBO60941 627 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 TBC1D8O95759 1140 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 SLC25A27O95847 323 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 BCRP11274 1271 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 FDPSP14324 419 aaKnown RBP18.22■□□□□ 0.51
USP40-206ENST00000443711 COPB2P35606 906 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 SLC4A3P48751 1232 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 Q3C1V9 767 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 TKFCQ3LXA3 575 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 RIOX2Q8IUF8 465 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 PCDHA1Q9Y5I3 950 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 ABCB11O95342 1321 aa18.22■□□□□ 0.51
USP40-206ENST00000443711 ALAS1P13196 640 aa18.21■□□□□ 0.51
USP40-206ENST00000443711 USH1GQ495M9 461 aa18.21■□□□□ 0.51
USP40-206ENST00000443711 HEATR3Q7Z4Q2 680 aa18.21■□□□□ 0.51
USP40-206ENST00000443711 FAM184AQ8NB25 1140 aa18.21■□□□□ 0.51
USP40-206ENST00000443711 COA7Q96BR5 231 aa18.21■□□□□ 0.51
USP40-206ENST00000443711 MOV10L1Q9BXT6 1211 aaKnown RBP18.21■□□□□ 0.51
USP40-206ENST00000443711 KIF3AQ9Y496 699 aa18.21■□□□□ 0.51
USP40-206ENST00000443711 WWC2Q6AWC2 1192 aa18.2■□□□□ 0.5
USP40-206ENST00000443711 CCAR1Q8IX12 1150 aaKnown RBP18.2■□□□□ 0.5
USP40-206ENST00000443711 SHCBP1Q8NEM2 672 aa18.2■□□□□ 0.5
USP40-206ENST00000443711 CHST13Q8NET6 341 aa18.2■□□□□ 0.5
USP40-206ENST00000443711 GPKOWQ92917 476 aaPredicted RBP eCLIP18.2■□□□□ 0.5
USP40-206ENST00000443711 TRERF1Q96PN7 1200 aa18.2■□□□□ 0.5
USP40-206ENST00000443711 R3HDMLQ9H3Y0 253 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms