RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 AP5S1Q9NUS5 200 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 ZMYM5Q9UJ78 669 aa8.76□□□□□ -1.01
CCDC88A-206ENST00000430086 CD3EP07766 207 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 GSTM1P09488 218 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 KIR2DL1P43626 348 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 KIR2DL2P43627 348 aaPredicted RBP8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 AFMP43652 599 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 AMPD2Q01433 879 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 CHRNEQ04844 493 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 NR0B2Q15466 257 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 ZPBP2Q6X784 338 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 SPPL2CQ8IUH8 684 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 OXR1Q8N573 874 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 MKL1Q969V6 931 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 DNAJC2Q99543 621 aaKnown RBP8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 CDADC1Q9BWV3 514 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 SP110Q9HB58 689 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 ERVK13-1Q9NX77 482 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 TNFRSF10DQ9UBN6 386 aa8.75□□□□□ -1.01
CCDC88A-206ENST00000430086 FITM1A5D6W6 292 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 AURKAO14965 403 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 PDPK1O15530 556 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 VAMP4O75379 141 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 ITGAVP06756 1048 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 JUNBP17275 347 aaPredicted RBP8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 RASGRF1Q13972 1273 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 ZNF227Q86WZ6 799 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 PPP1R14AQ96A00 147 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 MCMBPQ9BTE3 642 aa8.74□□□□□ -1.01
CCDC88A-206ENST00000430086 AGRPO00253 132 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 FGF10O15520 208 aaPredicted RBP8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 KCNH1O95259 989 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 PAPLNO95428 1278 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 RAC2P15153 192 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 IFNGR1P15260 489 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 RCSD1Q6JBY9 416 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 PMFBP1Q8TBY8 1022 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 SGSM3Q96HU1 749 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 HHIPL1Q96JK4 782 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 LRP2BPQ9P2M1 347 aa8.73□□□□□ -1.01
CCDC88A-206ENST00000430086 FADS2P1A8MWK0 482 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 CAPNS1P04632 268 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 TAL1P17542 331 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 CEBPAP49715 358 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 ERVFC1P60507 584 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 DPY19L1Q2PZI1 675 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 EEF1DP3Q658K8 133 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 GTF2IRD2BQ6EKJ0 949 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 CYP2R1Q6VVX0 501 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 GTF2IRD2Q86UP8 949 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 LILRA2Q8N149 483 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 TMEM52Q8NDY8 209 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 MYLIPQ8WY64 445 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 LGR4Q9BXB1 951 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 CYP26B1Q9NR63 512 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 GPR55Q9Y2T6 319 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 BACE2Q9Y5Z0 518 aa8.72□□□□□ -1.01
CCDC88A-206ENST00000430086 IQCA1LA6NCM1 817 aa8.71□□□□□ -1.02
CCDC88A-206ENST00000430086 RASA3Q14644 834 aa8.71□□□□□ -1.02
CCDC88A-206ENST00000430086 OSBPL2Q9H1P3 480 aa8.71□□□□□ -1.02
CCDC88A-206ENST00000430086 NKX2-4Q9H2Z4 354 aa8.71□□□□□ -1.02
CCDC88A-206ENST00000430086 A0A1W2PQU0 124 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 C2orf71A6NGG8 1288 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 NOTOA8MTQ0 251 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 STXBP3O00186 592 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 FYB2Q5VWT5 728 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 MCTP1Q6DN14 999 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 COPS5Q92905 334 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 KIRREL1Q96J84 757 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 PTCHD1Q96NR3 888 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 DEPDC7Q96QD5 511 aa8.7□□□□□ -1.02
CCDC88A-206ENST00000430086 A0A1W2PQ45 241 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 A0A1W2PQY0 241 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 TBX1O43435 398 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 NRDCO43847 1150 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 USP2O75604 605 aaPredicted RBP8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 HOXC12P31275 282 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 SNX17Q15036 470 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 HLA-DQA1Q5Y7H0 255 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 SLCO6A1Q86UG4 719 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 LRRC47Q8N1G4 583 aaKnown RBP8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 NAT16Q8N8M0 369 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 ABHD4Q8TB40 342 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 BTN2A2Q8WVV5 523 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 CCDC140Q96MF4 163 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 SNTG2Q9NY99 539 aa8.69□□□□□ -1.02
CCDC88A-206ENST00000430086 CCDC85CA6NKD9 419 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 TBC1D8O95759 1140 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 SCG5P05408 212 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 SEPHS1P49903 392 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 RTP1P59025 263 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 PPP2R2AP63151 447 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 MTERF2Q49AM1 385 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 CEP128Q6ZU80 1094 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 ZSWIM9Q86XI8 627 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 LNPKQ9C0E8 428 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 C19orf44Q9H6X5 657 aa8.68□□□□□ -1.02
CCDC88A-206ENST00000430086 FAM221BA6H8Z2 402 aa8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 WTIPA6NIX2 430 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 TRHRP34981 398 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms