RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 CNNM2Q9H8M5 875 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 MKNK2Q9HBH9 465 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 ZSWIM5Q9P217 1185 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 ADAMTS6Q9UKP5 1117 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 TMEM2Q9UHN6 1383 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 ZNF142P52746 1687 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-208ENST00000423463 TMEM265A0A087WTH1 108 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 RGS13O14921 159 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 NPHP4O75161 1426 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-208ENST00000423463 NME1P15531 152 aaKnown RBP3.58□□□□□ -1.84
VPS13A-208ENST00000423463 PLCL1Q15111 1095 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 CDCP2Q5VXM1 449 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 LSRQ86X29 649 aaPredicted RBP3.58□□□□□ -1.84
VPS13A-208ENST00000423463 SLC6A18Q96N87 628 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 PITPNM2Q9BZ72 1349 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 ARHGAP23Q9P227 1491 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 MRVI1Q9Y6F6 885 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 MED14O60244 1454 aa3.58□□□□□ -1.84
VPS13A-208ENST00000423463 MEIS3P2A8K0S8 358 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 CYP7A1P22680 504 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 PRKCQQ04759 706 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 IKZF1Q13422 519 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 TMEM192Q8IY95 271 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 RASGRP4Q8TDF6 673 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 UBE2FQ969M7 185 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 MINPP1Q9UNW1 487 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 SYNMO15061 1565 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 SLIT1O75093 1534 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 RPGRIP1LQ68CZ1 1315 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 CFAP65Q6ZU64 1925 aaKnown RBP3.57□□□□□ -1.84
VPS13A-208ENST00000423463 SOX9P48436 509 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 CLCN7P51798 805 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 CHMP4BP1P59074 171 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 FAM169BQ8N8A8 192 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 RNF141Q8WVD5 230 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 SEMA3GQ9NS98 782 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 E9PCH4 1651 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 SCAF11Q99590 1463 aaKnown RBP3.57□□□□□ -1.84
VPS13A-208ENST00000423463 STRCQ7RTU9 1775 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 C9IYK1 514 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 CLEC3AO75596 197 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 DNAJA1P31689 397 aaKnown RBP3.57□□□□□ -1.84
VPS13A-208ENST00000423463 ASB11Q8WXH4 323 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 ANAPC16Q96DE5 110 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 TINF2Q9BSI4 451 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 MKRN2Q9H000 416 aaKnown RBP3.57□□□□□ -1.84
VPS13A-208ENST00000423463 TBX22Q9Y458 520 aa3.57□□□□□ -1.84
VPS13A-208ENST00000423463 RIMS2Q9UQ26 1411 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 KDM5AP29375 1690 aaKnown RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 PIK3C2BO00750 1634 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 KIR3DL1P43629 444 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 ZP2Q05996 745 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 PPP2R5EQ16537 467 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 ANGEL2Q5VTE6 544 aaKnown RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 C22orf34Q6ZV56 151 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 TMC3Q7Z5M5 1100 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 CPLX3Q8WVH0 158 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 MISP3Q96FF7 219 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 SHDQ96IW2 340 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 SRRTQ9BXP5 876 aaKnown RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 CARS2Q9HA77 564 aaKnown RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 VAV3Q9UKW4 847 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 PCDHB10Q9UN67 800 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 ADGRB3O60242 1522 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 UBR1Q8IWV7 1749 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 PLEKHG1Q9ULL1 1385 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 ZNF335Q9H4Z2 1342 aaPredicted RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 MEIS1O00470 390 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 TNFRSF10CO14798 259 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 KCNA6P17658 529 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 ATF4P18848 351 aaPredicted RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 LRRFIP1Q32MZ4 808 aaKnown RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 ZNF792Q3KQV3 632 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 NBPF12Q5TAG4 269 aaPredicted RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 DCAF15Q66K64 600 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 PPFIBP1Q86W92 1011 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 STK11IPQ8N1F8 1099 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 VWCEQ96DN2 955 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 FBXL18Q96ME1 805 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 CRBNQ96SW2 442 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 DUSP15Q9H1R2 295 aaPredicted RBP3.56□□□□□ -1.84
VPS13A-208ENST00000423463 TRPM2O94759 1503 aa3.56□□□□□ -1.84
VPS13A-208ENST00000423463 CCDC144AA2RUR9 1427 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 ZFYVE9O95405 1425 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 ANKRD30BQ9BXX2 1392 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 TP53P04637 393 aaPredicted RBP3.55□□□□□ -1.84
VPS13A-208ENST00000423463 IMPDH2P12268 514 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 GUCY2CP25092 1073 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 TPP2P29144 1249 aaPredicted RBP3.55□□□□□ -1.84
VPS13A-208ENST00000423463 EIF6P56537 245 aaKnown RBP3.55□□□□□ -1.84
VPS13A-208ENST00000423463 SLC26A8Q96RN1 970 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 ASPNQ9BXN1 380 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.55□□□□□ -1.84
VPS13A-208ENST00000423463 TMEM131LA2VDJ0 1609 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 LTBP3Q9NS15 1303 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 FUT4P22083 530 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 RGL3Q3MIN7 710 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 UNC5AQ6ZN44 842 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 TTC6Q86TZ1 520 aa3.55□□□□□ -1.84
VPS13A-208ENST00000423463 FBXO41Q8TF61 875 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms