RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 MB21D1Q8N884 522 aa9.8□□□□□ -0.84
TRIM48-201ENST00000417545 ATG4CQ96DT6 458 aa9.8□□□□□ -0.84
TRIM48-201ENST00000417545 TMX3Q96JJ7 454 aa9.8□□□□□ -0.84
TRIM48-201ENST00000417545 PNMA2Q9UL42 364 aa9.8□□□□□ -0.84
TRIM48-201ENST00000417545 HPS5Q9UPZ3 1129 aa9.8□□□□□ -0.84
TRIM48-201ENST00000417545 SMC3Q9UQE7 1217 aa9.8□□□□□ -0.84
TRIM48-201ENST00000417545 THSD7BQ9C0I4 1608 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 CNTNAP5Q8WYK1 1306 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 PTPDC1A2A3K4 754 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 SPDYE16A6NNV3 312 aaPredicted RBP9.79□□□□□ -0.84
TRIM48-201ENST00000417545 CD2BP2O95400 341 aaKnown RBP9.79□□□□□ -0.84
TRIM48-201ENST00000417545 IFNAR1P17181 557 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 SMARCA1P28370 1054 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 TM4SF4P48230 202 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 SNAP25P60880 206 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 CCNA1P78396 465 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 HMGN5P82970 282 aaKnown RBP9.79□□□□□ -0.84
TRIM48-201ENST00000417545 TRIM29Q14134 588 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 USH1GQ495M9 461 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 BTNL9Q6UXG8 535 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 HEATR3Q7Z4Q2 680 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 FBXO11Q86XK2 927 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 PHKBQ93100 1093 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 DDX11Q96FC9 970 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 PIGSQ96S52 555 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 P2RX7Q99572 595 aaKnown RBP9.79□□□□□ -0.84
TRIM48-201ENST00000417545 LLPHQ9BRT6 129 aaKnown RBP9.79□□□□□ -0.84
TRIM48-201ENST00000417545 RNF26Q9BY78 433 aaPredicted RBP9.79□□□□□ -0.84
TRIM48-201ENST00000417545 CCPG1Q9ULG6 757 aa9.79□□□□□ -0.84
TRIM48-201ENST00000417545 A0A0G2JMZ2 1700 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 VWA5AO00534 786 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 ZBTB5O15062 677 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 PPFIA3O75145 1194 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 TRPA1O75762 1119 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 DEXIO95424 95 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 PRR29P0C7W0 189 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 ALAS1P13196 640 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 COPB2P35606 906 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 FOSBP53539 338 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 MOGSQ13724 837 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 KIF22Q14807 665 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 QRICH1Q2TAL8 776 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 SNRNP48Q6IEG0 339 aaKnown RBP9.78□□□□□ -0.84
TRIM48-201ENST00000417545 SRBD1Q8N5C6 995 aaKnown RBP9.78□□□□□ -0.84
TRIM48-201ENST00000417545 ANKRD13CQ8N6S4 541 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 SPRYD3Q8NCJ5 442 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 CCDC12Q8WUD4 166 aaPredicted RBP9.78□□□□□ -0.84
TRIM48-201ENST00000417545 ZIC5Q96T25 663 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 PTPN18Q99952 460 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 AMNQ9BXJ7 453 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 JMJD4Q9H9V9 463 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 RAVER2Q9HCJ3 691 aaKnown RBP9.78□□□□□ -0.84
TRIM48-201ENST00000417545 TSHZ2Q9NRE2 1034 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 ORC3Q9UBD5 711 aaPredicted RBP9.78□□□□□ -0.84
TRIM48-201ENST00000417545 RABGAP1Q9Y3P9 1069 aa9.78□□□□□ -0.84
TRIM48-201ENST00000417545 V9GY48 417 aaPredicted RBP9.78□□□□□ -0.84
TRIM48-201ENST00000417545 RBBP6Q7Z6E9 1792 aaKnown RBP9.78□□□□□ -0.84
TRIM48-201ENST00000417545 STK36Q9NRP7 1315 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 PNMA6FA0A0J9YX94 578 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 hCG_1642624A0A1W2PR95 340 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 PRPF3O43395 683 aaKnown RBP9.77□□□□□ -0.85
TRIM48-201ENST00000417545 CA12O43570 354 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 FMNL1O95466 1100 aaPredicted RBP9.77□□□□□ -0.85
TRIM48-201ENST00000417545 NAPAP54920 295 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 CRHR2Q13324 411 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 GNL2Q13823 731 aaKnown RBP9.77□□□□□ -0.85
TRIM48-201ENST00000417545 NCAPG2Q86XI2 1143 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 GPRC5AQ8NFJ5 357 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 CCDC148Q8NFR7 591 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 TEX13BQ9BXU2 312 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 RANBP17Q9H2T7 1088 aaKnown RBP9.77□□□□□ -0.85
TRIM48-201ENST00000417545 RIOX1Q9H6W3 641 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 SLC38A10Q9HBR0 1119 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 HOMER2Q9NSB8 354 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 CPA4Q9UI42 421 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 IVNS1ABPQ9Y6Y0 642 aa9.77□□□□□ -0.85
TRIM48-201ENST00000417545 ABCB11O95342 1321 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 hCG_1984214I3L0E3 225 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 ECM2O94769 699 aaPredicted RBP9.76□□□□□ -0.85
TRIM48-201ENST00000417545 SLC25A27O95847 323 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 ICAM1P05362 532 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 SCG2P13521 617 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 STAT3P40763 770 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 OAZ1P54368 228 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 ERVK-9P63128 1117 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 ERVK-24P63145 666 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 FAM110CQ1W6H9 321 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 LBX2Q6XYB7 198 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 NBPF11Q86T75 865 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 ZNF713Q8N859 430 aaPredicted RBP9.76□□□□□ -0.85
TRIM48-201ENST00000417545 GPKOWQ92917 476 aaPredicted RBP eCLIP9.76□□□□□ -0.85
TRIM48-201ENST00000417545 CUL5Q93034 780 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 ALG1Q9BT22 464 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 BRMS1Q9HCU9 246 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 FAM217BQ9NTX9 383 aaPredicted RBP9.76□□□□□ -0.85
TRIM48-201ENST00000417545 FBXO40Q9UH90 709 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 MRPL11Q9Y3B7 192 aaKnown RBP9.76□□□□□ -0.85
TRIM48-201ENST00000417545 RBM19Q9Y4C8 960 aaKnown RBP9.76□□□□□ -0.85
TRIM48-201ENST00000417545 PCDHA1Q9Y5I3 950 aa9.76□□□□□ -0.85
TRIM48-201ENST00000417545 BAZ2BQ9UIF8 2168 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms