RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 UBXN1Q04323 297 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 INF2Q27J81 1249 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 C12orf60Q5U649 245 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 ARL6IP4Q66PJ3 421 aaKnown RBP11.11□□□□□ -0.63
SS18-203ENST00000415083 GIMAP8Q8ND71 665 aaPredicted RBP11.11□□□□□ -0.63
SS18-203ENST00000415083 ANKS1AQ92625 1134 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 CTAGE9A4FU28 777 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 BMP15O95972 392 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 FCER1AP12319 257 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 XBP1P17861 261 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 LONP1P36776 959 aaKnown RBP11.11□□□□□ -0.63
SS18-203ENST00000415083 TFAP4Q01664 338 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 MEA1Q16626 185 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 CYP26C1Q6V0L0 522 aa11.11□□□□□ -0.63
SS18-203ENST00000415083 NUP88Q99567 741 aaPredicted RBP11.11□□□□□ -0.63
SS18-203ENST00000415083 NAPGQ99747 312 aaPredicted RBP11.11□□□□□ -0.63
SS18-203ENST00000415083 TTF2Q9UNY4 1162 aaKnown RBP11.11□□□□□ -0.63
SS18-203ENST00000415083 EPN1Q9Y6I3 576 aaPredicted RBP11.11□□□□□ -0.63
SS18-203ENST00000415083 ROBO3Q96MS0 1386 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 KDM4FA0A1W2PPD8 638 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 B4DLN1 442 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 ZNF185O15231 689 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 RHOBTB3O94955 611 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 PLEKP08567 350 aaPredicted RBP11.1□□□□□ -0.63
SS18-203ENST00000415083 GOLGA8HP0CJ92 632 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 PCP11498 1178 aaKnown RBP11.1□□□□□ -0.63
SS18-203ENST00000415083 STK4Q13043 487 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 GRM4Q14833 912 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 DDB1Q16531 1140 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 KIF4BQ2VIQ3 1234 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 GPR101Q96P66 508 aaPredicted RBP11.1□□□□□ -0.63
SS18-203ENST00000415083 CAPN11Q9UMQ6 739 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 MYH10P35580 1976 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 FOCADQ5VW36 1801 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 A0A0G2JS52 829 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 GTF2E1P29083 439 aaPredicted RBP11.1□□□□□ -0.63
SS18-203ENST00000415083 ANKRD40Q6AI12 368 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 CTCFLQ8NI51 663 aaPredicted RBP11.1□□□□□ -0.63
SS18-203ENST00000415083 ARFGEF1Q9Y6D6 1849 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 PSMD14O00487 310 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 SYF2O95926 243 aaKnown RBP11.1□□□□□ -0.63
SS18-203ENST00000415083 MCM6Q14566 821 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 DIXDC1Q155Q3 683 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 CLEC4GQ6UXB4 293 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 CREBRFQ8IUR6 639 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 KIAA0895Q8NCT3 520 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 PNMA1Q8ND90 353 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 PURBQ96QR8 312 aaKnown RBP11.1□□□□□ -0.63
SS18-203ENST00000415083 ATP8A2Q9NTI2 1148 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 MYO6Q9UM54 1294 aa11.1□□□□□ -0.63
SS18-203ENST00000415083 NHSQ6T4R5 1651 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 PALM3A6NDB9 673 aaPredicted RBP11.09□□□□□ -0.63
SS18-203ENST00000415083 CAVIN4Q5BKX8 364 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 CEP112Q8N8E3 955 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 GUCA1BQ9UMX6 200 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 TAF1LQ8IZX4 1826 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 SRGNP10124 158 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 STAT6P42226 847 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 RAD51AP2Q09MP3 1159 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 KCNB1Q14721 858 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 CASP8Q14790 479 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 TXNRD1Q16881 649 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 DAGLBQ8NCG7 672 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 ZFP91Q96JP5 570 aaPredicted RBP11.09□□□□□ -0.63
SS18-203ENST00000415083 SEMA6BQ9H3T3 888 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 MCM9Q9NXL9 1143 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 FAN1Q9Y2M0 1017 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 CCDC66A2RUB6 948 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 TSPY2A6NKD2 308 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 H7C1D1 291 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 PLCG1P19174 1290 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 HIBADHP31937 336 aaKnown RBP11.09□□□□□ -0.63
SS18-203ENST00000415083 FILIP1LQ4L180 1135 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 PAPD7Q5XG87 772 aaKnown RBP11.09□□□□□ -0.63
SS18-203ENST00000415083 GLIS3Q8NEA6 775 aa11.09□□□□□ -0.63
SS18-203ENST00000415083 SMCR8Q8TEV9 937 aaPredicted RBP11.09□□□□□ -0.63
SS18-203ENST00000415083 GNL3LQ9NVN8 582 aaKnown RBP11.09□□□□□ -0.63
SS18-203ENST00000415083 A0A1W2PQC6 194 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 RPS8P62241 208 aaKnown RBP11.08□□□□□ -0.64
SS18-203ENST00000415083 WDR93Q6P2C0 686 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 GSPT2Q8IYD1 628 aaKnown RBP11.08□□□□□ -0.64
SS18-203ENST00000415083 TMEM47Q9BQJ4 181 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 CCSER1Q9C0I3 900 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 SH3GLB2Q9NR46 395 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 BARHL2Q9NY43 387 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 ARPP21Q9UBL0 812 aaPredicted RBP11.08□□□□□ -0.64
SS18-203ENST00000415083 SPATA31A5Q5VU36 1347 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 SPATA31A7Q8IWB4 1347 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 BTAF1O14981 1849 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 ZMYND10O75800 440 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 PRPF6O94906 941 aaKnown RBP11.08□□□□□ -0.64
SS18-203ENST00000415083 RASA1P20936 1047 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 WHAMMP3Q1A5X7 153 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 MUM1L1Q5H9M0 696 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 AEBP2Q6ZN18 517 aaPredicted RBP11.08□□□□□ -0.64
SS18-203ENST00000415083 KRT26Q7Z3Y9 468 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 GPIHBP1Q8IV16 184 aa11.08□□□□□ -0.64
SS18-203ENST00000415083 MSL3Q8N5Y2 521 aaKnown RBP11.08□□□□□ -0.64
SS18-203ENST00000415083 CRNKL1Q9BZJ0 848 aaKnown RBP11.08□□□□□ -0.64
SS18-203ENST00000415083 BRMS1Q9HCU9 246 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms