RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 CCDC122Q5T0U0 273 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 SEL1L2Q5TEA6 688 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 CTR9Q6PD62 1173 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 DEPTORQ8TB45 409 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 MTRF1LQ9UGC7 380 aaKnown RBP13.28□□□□□ -0.28
PTPRF-205ENST00000414879 NBPF26B4DH59 902 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 PTGS1P23219 599 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 STAT2P52630 851 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 DYNLL1P63167 89 aaKnown RBP13.28□□□□□ -0.28
PTPRF-205ENST00000414879 RBM10P98175 930 aaKnown RBP13.28□□□□□ -0.28
PTPRF-205ENST00000414879 ADCK5Q3MIX3 580 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 EPHA10Q5JZY3 1008 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 NBPF10Q6P3W6 841 aaKnown RBP13.28□□□□□ -0.28
PTPRF-205ENST00000414879 FAM173BQ6P4H8 233 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 GPBP1Q86WP2 473 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 NBPF15Q8N660 670 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 PKD2L1Q9P0L9 805 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 ATP6V0A2Q9Y487 856 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 UTYO14607 1347 aa13.28□□□□□ -0.28
PTPRF-205ENST00000414879 LMAN1P49257 510 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 MAP2K1Q02750 393 aaPredicted RBP13.27□□□□□ -0.28
PTPRF-205ENST00000414879 AOC3Q16853 763 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 PRR16Q569H4 304 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 HSP90AA4PQ58FG1 418 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 RCSD1Q6JBY9 416 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 CCDC26Q8TAB7 109 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 FAM212AQ96EL1 285 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 DBNDD1Q9H9R9 158 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 IQSEC2Q5JU85 1478 aa13.27□□□□□ -0.28
PTPRF-205ENST00000414879 TMOD1P28289 359 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 EAPPQ56P03 285 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-205ENST00000414879 TAF3Q5VWG9 929 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 TBC1D9BQ66K14 1250 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 SPECC1LQ69YQ0 1117 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 CROCCP2Q86T23 111 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 MAIP1Q8WWC4 291 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 PCDHA7Q9UN72 937 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 PNMA6FA0A0J9YX94 578 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 CSF1RP07333 972 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 CDK8P49336 464 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 PPP1R2P3Q6NXS1 205 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 TPH2Q8IWU9 490 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 SLC16A10Q8TF71 515 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.27□□□□□ -0.29
PTPRF-205ENST00000414879 ZSWIM5Q9P217 1185 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 MROH7-TTC4A0A0A0MT08 1334 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 FRMPD2Q68DX3 1309 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-205ENST00000414879 PHLPP2Q6ZVD8 1323 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 ATP2A2P16615 1042 aaKnown RBP13.27□□□□□ -0.29
PTPRF-205ENST00000414879 MMP14P50281 582 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 PTGDRQ13258 359 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 SYDE2Q5VT97 1194 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 KIAA1524Q8TCG1 905 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 GLG1Q92896 1179 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 TRIM6Q9C030 488 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-205ENST00000414879 VPS16Q9H269 839 aa13.27□□□□□ -0.29
PTPRF-205ENST00000414879 VAV2P52735 878 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 ALCAMQ13740 583 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 UBL4BQ8N7F7 174 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 RIC8AQ9NPQ8 531 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 PNMA3Q9UL41 463 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 SPATA1Q5VX52 437 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 DHTKD1Q96HY7 919 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-205ENST00000414879 RBSNQ9H1K0 784 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 GUCA1BQ9UMX6 200 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 XRCC5P13010 732 aaKnown RBP13.26□□□□□ -0.29
PTPRF-205ENST00000414879 EEF2P13639 858 aaKnown RBP13.26□□□□□ -0.29
PTPRF-205ENST00000414879 KIF23Q02241 960 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-205ENST00000414879 TFDP1Q14186 410 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 MRFAP1L1Q96HT8 127 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 FBXO40Q9UH90 709 aa13.26□□□□□ -0.29
PTPRF-205ENST00000414879 ZNF142P52746 1687 aaPredicted RBP13.26□□□□□ -0.29
PTPRF-205ENST00000414879 COPB2P35606 906 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 ARID5AQ03989 594 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 PSMD2Q13200 908 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 APOBEC3FQ8IUX4 373 aaKnown RBP13.25□□□□□ -0.29
PTPRF-205ENST00000414879 RPGRIP1Q96KN7 1286 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 RIPOR2Q9Y4F9 1068 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 PPP2R5EQ16537 467 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 ZNF569Q5MCW4 686 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 HOMER2Q9NSB8 354 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 TESPA1A2RU30 521 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-205ENST00000414879 ORC4O43929 436 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 CYP2E1P05181 493 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-205ENST00000414879 CCDC14Q49A88 953 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 FAM26FQ5R3K3 315 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 GADL1Q6ZQY3 521 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 CCDC117Q8IWD4 279 aaPredicted RBP13.25□□□□□ -0.29
PTPRF-205ENST00000414879 ARFGAP2Q8N6H7 521 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 CRKP46108 304 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 SFMBT2Q5VUG0 894 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 DYMQ7RTS9 669 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 CCDC113Q9H0I3 377 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 HAUS2Q9NVX0 235 aa13.25□□□□□ -0.29
PTPRF-205ENST00000414879 PABPN1LA6NDY0 278 aaKnown RBP13.24□□□□□ -0.29
PTPRF-205ENST00000414879 IKBKBO14920 756 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 KRT9P35527 623 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 TECP42680 631 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 GRM1Q13255 1194 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms