RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 GADL1Q6ZQY3 521 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 ZNF784Q8NCA9 323 aaPredicted RBP11.14□□□□□ -0.63
RIF1-202ENST00000414861 FAM205CA6NFA0 338 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 U2AF2P26368 475 aaKnown RBP eCLIP11.14□□□□□ -0.639e-7■■■□□ 19.2
RIF1-202ENST00000414861 NLRP5P59047 1200 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 DNM1Q05193 864 aaKnown RBP11.14□□□□□ -0.63
RIF1-202ENST00000414861 PRPF38AQ8NAV1 312 aaKnown RBP11.14□□□□□ -0.63
RIF1-202ENST00000414861 RASGRP4Q8TDF6 673 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 TNFRSF25Q93038 417 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 ATG4CQ96DT6 458 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 ZNF536O15090 1300 aa11.14□□□□□ -0.63
RIF1-202ENST00000414861 EARS2Q5JPH6 523 aaKnown RBP11.13□□□□□ -0.63
RIF1-202ENST00000414861 CATSPERGQ6ZRH7 1159 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 SAPCD2Q86UD0 394 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 PROCA1Q8NCQ7 364 aaPredicted RBP11.13□□□□□ -0.63
RIF1-202ENST00000414861 CCDC148Q8NFR7 591 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 FTOQ9C0B1 505 aaKnown RBP eCLIP11.13□□□□□ -0.63
RIF1-202ENST00000414861 ZMYND12Q9H0C1 365 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 ZSCAN16Q9H4T2 348 aaPredicted RBP11.13□□□□□ -0.63
RIF1-202ENST00000414861 PCDHA1Q9Y5I3 950 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 hCG_1984214I3L0E3 225 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 KRT2P35908 639 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 SAFBQ15424 915 aaKnown RBP eCLIP11.13□□□□□ -0.63
RIF1-202ENST00000414861 POTEEQ6S8J3 1075 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 CLEC17AQ6ZS10 378 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 FBXO11Q86XK2 927 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 ZNF713Q8N859 430 aaPredicted RBP11.13□□□□□ -0.63
RIF1-202ENST00000414861 AMNQ9BXJ7 453 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 SLC38A10Q9HBR0 1119 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 PCDHA4Q9UN74 947 aa11.13□□□□□ -0.63
RIF1-202ENST00000414861 SMCO2A6NFE2 343 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 SPDYE16A6NNV3 312 aaPredicted RBP11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L15C9J2P7 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L13C9JLJ4 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L11C9JVI0 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L18D6R9N7 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L22D6RA61 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L17D6RBQ6 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L19D6RCP7 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L20D6RJB6 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 M0R2N6 131 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 VWA5AO00534 786 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 OPLAHO14841 1288 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 TOMM70O94826 608 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 USP17L24Q0WX57 530 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 SNAPC2Q13487 334 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 GNL2Q13823 731 aaKnown RBP11.12□□□□□ -0.63
RIF1-202ENST00000414861 SPRYD7Q5W111 196 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 NOSTRINQ8IVI9 506 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 BLIDQ8IZY5 108 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 MS4A4AQ96JQ5 239 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 FOXP1Q9H334 677 aaPredicted RBP11.12□□□□□ -0.63
RIF1-202ENST00000414861 GDPD2Q9HCC8 539 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 CNPY2Q9Y2B0 182 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 ESYT2A0FGR8 921 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 CALML3P27482 149 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 DSG3P32926 999 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 MYSM1Q5VVJ2 828 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 GPAT2Q6NUI2 795 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 PPP1R18Q6NYC8 613 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 BRAPQ7Z569 592 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 RASAL3Q86YV0 1011 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 DAGLBQ8NCG7 672 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 REPS2Q8NFH8 660 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 CCDC12Q8WUD4 166 aaPredicted RBP11.12□□□□□ -0.63
RIF1-202ENST00000414861 AGBL1Q96MI9 1066 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 AGTPBP1Q9UPW5 1226 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 RBBP6Q7Z6E9 1792 aaKnown RBP11.12□□□□□ -0.63
RIF1-202ENST00000414861 MYH7BA7E2Y1 1941 aa11.12□□□□□ -0.63
RIF1-202ENST00000414861 PEX10O60683 326 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 COG2Q14746 738 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 RAVER2Q9HCJ3 691 aaKnown RBP11.11□□□□□ -0.63
RIF1-202ENST00000414861 ADAMTS5Q9UNA0 930 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 ATP6V1DQ9Y5K8 247 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 ICAM1P05362 532 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 NCLP19338 710 aaKnown RBP11.11□□□□□ -0.63
RIF1-202ENST00000414861 HOXA7P31268 230 aaPredicted RBP11.11□□□□□ -0.63
RIF1-202ENST00000414861 ADCY7P51828 1080 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 NBR1Q14596 966 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 UBE2SQ16763 222 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 CPXCR1Q8N123 301 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 FAM177A1Q8N128 213 aaPredicted RBP11.11□□□□□ -0.63
RIF1-202ENST00000414861 BRI3BPQ8WY22 251 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 GBP4Q96PP9 640 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 USP28Q96RU2 1077 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 BRMS1Q9HCU9 246 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 TFIP11Q9UBB9 837 aaKnown RBP11.11□□□□□ -0.63
RIF1-202ENST00000414861 PCDHA6Q9UN73 950 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 PCDHA8Q9Y5H6 950 aa11.11□□□□□ -0.63
RIF1-202ENST00000414861 WNT7AO00755 349 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 FIBPO43427 364 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 ZBTB48P10074 688 aaPredicted RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 TOB1P50616 345 aaPredicted RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 ZNF157P51786 506 aaPredicted RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 NFKBIBQ15653 356 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 ASCC2Q9H1I8 757 aaPredicted RBP11.1□□□□□ -0.63
RIF1-202ENST00000414861 C6orf50Q9HD87 102 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 RIC8AQ9NPQ8 531 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 TMEM260Q9NX78 707 aa11.1□□□□□ -0.63
RIF1-202ENST00000414861 ZNF214Q9UL59 606 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms