RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 ADCY7P51828 1080 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 STAT2P52630 851 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 SNW1Q13573 536 aaKnown RBP16.08■□□□□ 0.17
GPNMB-203ENST00000409458 LRSAM1Q6UWE0 723 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 DLK2Q6UY11 383 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 SCYL3Q8IZE3 742 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 ENGASEQ8NFI3 743 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 ZKSCAN4Q969J2 545 aaPredicted RBP16.08■□□□□ 0.17
GPNMB-203ENST00000409458 CLIC6Q96NY7 704 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 NUP62CLQ9H1M0 184 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 FBXO2Q9UK22 296 aaPredicted RBP16.08■□□□□ 0.17
GPNMB-203ENST00000409458 PRR12Q9ULL5 1215 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 MRVI1Q9Y6F6 885 aa16.08■□□□□ 0.17
GPNMB-203ENST00000409458 OTOFQ9HC10 1997 aa16.08■□□□□ 0.16
GPNMB-203ENST00000409458 GOLGA6L3A6NEY3 463 aa16.08■□□□□ 0.16
GPNMB-203ENST00000409458 CUTAO60888 179 aa16.08■□□□□ 0.16
GPNMB-203ENST00000409458 FAM160A1Q05DH4 1040 aa16.08■□□□□ 0.16
GPNMB-203ENST00000409458 ZNF174Q15697 407 aa16.08■□□□□ 0.16
GPNMB-203ENST00000409458 KRI1Q8N9T8 703 aaKnown RBP16.08■□□□□ 0.16
GPNMB-203ENST00000409458 CLSTN2Q9H4D0 955 aa16.08■□□□□ 0.16
GPNMB-203ENST00000409458 MORC2Q9Y6X9 1032 aaPredicted RBP16.08■□□□□ 0.16
GPNMB-203ENST00000409458 SCN4AP35499 1836 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 NDUFA8P51970 172 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 GRIN1Q05586 938 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 DGKZQ13574 1117 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 CAMK4Q16566 473 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 INF2Q27J81 1249 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 SHC4Q6S5L8 630 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 KRT25Q7Z3Z0 450 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 REXO1Q8N1G1 1221 aaKnown RBP16.07■□□□□ 0.16
GPNMB-203ENST00000409458 DCPSQ96C86 337 aaKnown RBP16.07■□□□□ 0.16
GPNMB-203ENST00000409458 KLRG1Q96E93 195 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 RIC8AQ9NPQ8 531 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 TMEM260Q9NX78 707 aa16.07■□□□□ 0.16
GPNMB-203ENST00000409458 BIN2Q9UBW5 565 aaPredicted RBP16.07■□□□□ 0.16
GPNMB-203ENST00000409458 GLTPD2A6NH11 291 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 PFKFB1P16118 471 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 TAL1P17542 331 aaPredicted RBP16.06■□□□□ 0.16
GPNMB-203ENST00000409458 PTPREP23469 700 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 CMA1P23946 247 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 EPHX2P34913 555 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 SUPT20HL1Q3ZLR7 823 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 JAKMIP3Q5VZ66 844 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 FMR1NBQ8N0W7 255 aaPredicted RBP16.06■□□□□ 0.16
GPNMB-203ENST00000409458 KIAA1683Q9H0B3 1180 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 PCDHA1Q9Y5I3 950 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 WDR90Q96KV7 1748 aa16.06■□□□□ 0.16
GPNMB-203ENST00000409458 LETM1O95202 739 aaPredicted RBP16.05■□□□□ 0.16
GPNMB-203ENST00000409458 BMP15O95972 392 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 MCM7P33993 719 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 ATP2C1P98194 919 aaPredicted RBP16.05■□□□□ 0.16
GPNMB-203ENST00000409458 MTMR2Q13614 643 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 NONOQ15233 471 aaKnown RBP eCLIP16.05■□□□□ 0.16
GPNMB-203ENST00000409458 UBE2SQ16763 222 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 RESP18Q5W5W9 173 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 USP50Q70EL3 339 aaPredicted RBP16.05■□□□□ 0.16
GPNMB-203ENST00000409458 SULF1Q8IWU6 871 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 PLA2G6O60733 806 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 PTPRAP18433 802 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 CLK2P49760 499 aaKnown RBP16.05■□□□□ 0.16
GPNMB-203ENST00000409458 PTGDRQ13258 359 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 PRKG1Q13976 671 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 USH1GQ495M9 461 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 FBXO11Q86XK2 927 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.05■□□□□ 0.16
GPNMB-203ENST00000409458 CUL5Q93034 780 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 AMNQ9BXJ7 453 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 TNMDQ9H2S6 317 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 FBXO28Q9NVF7 368 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 HPSEQ9Y251 543 aa16.05■□□□□ 0.16
GPNMB-203ENST00000409458 SRPRBQ9Y5M8 271 aaKnown RBP16.05■□□□□ 0.16
GPNMB-203ENST00000409458 FAM237AA0A1B0GTK4 181 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 WDR46O15213 610 aaKnown RBP16.04■□□□□ 0.16
GPNMB-203ENST00000409458 MAP3K11Q16584 847 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 SPECC1Q5M775 1068 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 NOL9Q5SY16 702 aaKnown RBP16.04■□□□□ 0.16
GPNMB-203ENST00000409458 KRT26Q7Z3Y9 468 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 FAM160B2Q86V87 743 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 CHURC1Q8WUH1 139 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 LPAR1Q92633 364 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 KIFC2Q96AC6 838 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 WDR18Q9BV38 432 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 RANBP17Q9H2T7 1088 aaKnown RBP16.04■□□□□ 0.16
GPNMB-203ENST00000409458 PICK1Q9NRD5 415 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 FEM1BQ9UK73 627 aa16.04■□□□□ 0.16
GPNMB-203ENST00000409458 PARP14Q460N5 1801 aa16.03■□□□□ 0.16
GPNMB-203ENST00000409458 KINO60870 393 aaKnown RBP16.03■□□□□ 0.16
GPNMB-203ENST00000409458 USP2O75604 605 aaPredicted RBP16.03■□□□□ 0.16
GPNMB-203ENST00000409458 RBM43Q6ZSC3 357 aaKnown RBP16.03■□□□□ 0.16
GPNMB-203ENST00000409458 C4orf32Q8N8J7 132 aa16.03■□□□□ 0.16
GPNMB-203ENST00000409458 ZNF579Q8NAF0 562 aaKnown RBP16.03■□□□□ 0.16
GPNMB-203ENST00000409458 TBCKQ8TEA7 893 aa16.03■□□□□ 0.16
GPNMB-203ENST00000409458 FUCA2Q9BTY2 467 aa16.03■□□□□ 0.16
GPNMB-203ENST00000409458 CSRNP2Q9H175 543 aa16.03■□□□□ 0.16
GPNMB-203ENST00000409458 PSTPIP2Q9H939 334 aa16.03■□□□□ 0.16
GPNMB-203ENST00000409458 AS3MTQ9HBK9 375 aa16.03■□□□□ 0.16
GPNMB-203ENST00000409458 VCAM1P19320 739 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 MRPL12P52815 198 aaKnown RBP16.02■□□□□ 0.16
GPNMB-203ENST00000409458 SPP2Q13103 211 aa16.02■□□□□ 0.16
GPNMB-203ENST00000409458 CCDC174Q6PII3 467 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms