RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 STAT2P52630 851 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 SCRN1Q12765 414 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 SAMD1Q6SPF0 538 aaPredicted RBP15.5■□□□□ 0.07
LIMS1-204ENST00000409441 BTNL9Q6UXG8 535 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 FAM160B2Q86V87 743 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 CCDC82Q8N4S0 544 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 PRPF38AQ8NAV1 312 aaKnown RBP15.5■□□□□ 0.07
LIMS1-204ENST00000409441 SLF1Q9BQI6 1058 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 LZTS2Q9BRK4 669 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 VAT1LQ9HCJ6 419 aa15.5■□□□□ 0.07
LIMS1-204ENST00000409441 RBM27Q9P2N5 1060 aaKnown RBP15.5■□□□□ 0.07
LIMS1-204ENST00000409441 PLEKHA8P1O95397 391 aa15.49■□□□□ 0.07
LIMS1-204ENST00000409441 IRX3P78415 501 aaPredicted RBP15.49■□□□□ 0.07
LIMS1-204ENST00000409441 TMTC3Q6ZXV5 915 aa15.49■□□□□ 0.07
LIMS1-204ENST00000409441 NBPF11Q86T75 865 aa15.49■□□□□ 0.07
LIMS1-204ENST00000409441 SRBD1Q8N5C6 995 aaKnown RBP15.49■□□□□ 0.07
LIMS1-204ENST00000409441 SMARCC2Q8TAQ2 1214 aa15.49■□□□□ 0.07
LIMS1-204ENST00000409441 KIFC2Q96AC6 838 aa15.49■□□□□ 0.07
LIMS1-204ENST00000409441 PRR12Q9ULL5 1215 aa15.49■□□□□ 0.07
LIMS1-204ENST00000409441 KIF3AQ9Y496 699 aa15.49■□□□□ 0.07
LIMS1-204ENST00000409441 DHX16O60231 1041 aaKnown RBP15.48■□□□□ 0.07
LIMS1-204ENST00000409441 CYP2C8P10632 490 aa15.48■□□□□ 0.07
LIMS1-204ENST00000409441 SMARCA1P28370 1054 aa15.48■□□□□ 0.07
LIMS1-204ENST00000409441 NASPP49321 788 aaPredicted RBP15.48■□□□□ 0.07
LIMS1-204ENST00000409441 HMGN5P82970 282 aaKnown RBP15.48■□□□□ 0.07
LIMS1-204ENST00000409441 SYDE2Q5VT97 1194 aa15.48■□□□□ 0.07
LIMS1-204ENST00000409441 ADGRF4Q8IZF3 695 aa15.48■□□□□ 0.07
LIMS1-204ENST00000409441 ZCCHC17Q9NP64 241 aaKnown RBP15.48■□□□□ 0.07
LIMS1-204ENST00000409441 PNMA3Q9UL41 463 aa15.48■□□□□ 0.07
LIMS1-204ENST00000409441 PPP1R9AQ9ULJ8 1098 aa15.48■□□□□ 0.07
LIMS1-204ENST00000409441 NID2Q14112 1375 aa15.48■□□□□ 0.07
LIMS1-204ENST00000409441 CPLX1O14810 134 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 CYTH3O43739 400 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 GADD45BO75293 160 aaPredicted RBP15.47■□□□□ 0.07
LIMS1-204ENST00000409441 LETM1O95202 739 aaPredicted RBP15.47■□□□□ 0.07
LIMS1-204ENST00000409441 NTRK3Q16288 839 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 SLC35G1Q2M3R5 365 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 DNAJC5GQ8N7S2 189 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 ANP32BQ92688 251 aaKnown RBP15.47■□□□□ 0.07
LIMS1-204ENST00000409441 RIOX1Q9H6W3 641 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 GDPD2Q9HCC8 539 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 PTPRFP10586 1907 aa15.47■□□□□ 0.07
LIMS1-204ENST00000409441 KRT85P78386 507 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 CCDC173Q0VFZ6 552 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 FUT2Q10981 343 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 FOXD4L6Q3SYB3 417 aaPredicted RBP15.46■□□□□ 0.07
LIMS1-204ENST00000409441 FOXD4L3Q6VB84 417 aaPredicted RBP15.46■□□□□ 0.07
LIMS1-204ENST00000409441 ATG4CQ96DT6 458 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 JMJD4Q9H9V9 463 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 ADAMTS5Q9UNA0 930 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 ELP1O95163 1332 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 MYPNQ86TC9 1320 aa15.46■□□□□ 0.07
LIMS1-204ENST00000409441 SPDYE16A6NNV3 312 aaPredicted RBP15.46■□□□□ 0.06
LIMS1-204ENST00000409441 VWA5AO00534 786 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 PPFIA3O75145 1194 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 ALDH1A1P00352 501 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 IFNAR1P17181 557 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 SNAP25P60880 206 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 HERVK_113P62684 666 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 DNM1Q05193 864 aaKnown RBP15.46■□□□□ 0.06
LIMS1-204ENST00000409441 CCDC183Q5T5S1 534 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 CPLX2Q6PUV4 134 aaKnown RBP15.46■□□□□ 0.06
LIMS1-204ENST00000409441 SMCR8Q8TEV9 937 aaPredicted RBP15.46■□□□□ 0.06
LIMS1-204ENST00000409441 PARK7Q99497 189 aaKnown RBP15.46■□□□□ 0.06
LIMS1-204ENST00000409441 SPZ1Q9BXG8 430 aa15.46■□□□□ 0.06
LIMS1-204ENST00000409441 V9GY48 417 aaPredicted RBP15.46■□□□□ 0.06
LIMS1-204ENST00000409441 SYCE3A1L190 88 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 FIBPO43427 364 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 DTNBO60941 627 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 ZBED4O75132 1171 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 CTDNEP1O95476 244 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 TAF1CQ15572 869 aaPredicted RBP15.45■□□□□ 0.06
LIMS1-204ENST00000409441 POTEEQ6S8J3 1075 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 PIBF1Q8WXW3 757 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 PHKBQ93100 1093 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 PPP1R9BQ96SB3 815 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 ZSCAN16Q9H4T2 348 aaPredicted RBP15.45■□□□□ 0.06
LIMS1-204ENST00000409441 LOC285556D6RIA3 1793 aa15.45■□□□□ 0.06
LIMS1-204ENST00000409441 hCG_1642624A0A1W2PR95 340 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 CDKL5O76039 1030 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 FDX1P10109 184 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 LBX2Q6XYB7 198 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 FAM184AQ8NB25 1140 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 NSUN7Q8NE18 718 aaKnown RBP15.44■□□□□ 0.06
LIMS1-204ENST00000409441 MTMR8Q96EF0 704 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 RRP36Q96EU6 259 aaKnown RBP15.44■□□□□ 0.06
LIMS1-204ENST00000409441 PIGSQ96S52 555 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 SCAND2PQ9GZW5 306 aaPredicted RBP15.44■□□□□ 0.06
LIMS1-204ENST00000409441 RANBP17Q9H2T7 1088 aaKnown RBP15.44■□□□□ 0.06
LIMS1-204ENST00000409441 SLC38A10Q9HBR0 1119 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 ZFYVE28Q9HCC9 887 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 RBPJLQ9UBG7 517 aa15.44■□□□□ 0.06
LIMS1-204ENST00000409441 CTDP1Q9Y5B0 961 aaPredicted RBP15.44■□□□□ 0.06
LIMS1-204ENST00000409441 PRPF3O43395 683 aaKnown RBP15.43■□□□□ 0.06
LIMS1-204ENST00000409441 CA12O43570 354 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 JAK2O60674 1132 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 GCLCP48506 637 aaPredicted RBP15.43■□□□□ 0.06
LIMS1-204ENST00000409441 SSRP1Q08945 709 aaKnown RBP15.43■□□□□ 0.06
LIMS1-204ENST00000409441 CCDC174Q6PII3 467 aa15.43■□□□□ 0.06
LIMS1-204ENST00000409441 HOMER1Q86YM7 354 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms