RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 LOC285556D6RIA3 1793 aa20.85■□□□□ 0.93
SDC1-203ENST00000403076 PDHXO00330 501 aa20.84■□□□□ 0.93
SDC1-203ENST00000403076 INHBEP58166 350 aa20.84■□□□□ 0.93
SDC1-203ENST00000403076 CAPNS2Q96L46 248 aa20.84■□□□□ 0.93
SDC1-203ENST00000403076 AMNQ9BXJ7 453 aa20.84■□□□□ 0.93
SDC1-203ENST00000403076 MYH6P13533 1939 aa20.84■□□□□ 0.93
SDC1-203ENST00000403076 VPS37CA5D8V6 355 aaPredicted RBP20.83■□□□□ 0.93
SDC1-203ENST00000403076 SPDYE16A6NNV3 312 aaPredicted RBP20.83■□□□□ 0.93
SDC1-203ENST00000403076 VWA5AO00534 786 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 SYT1P21579 422 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 SREBF2Q12772 1141 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 TRAF1Q13077 416 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 WWC2Q6AWC2 1192 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 CPXCR1Q8N123 301 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 COA7Q96BR5 231 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 VPS54Q9P1Q0 977 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 SLC45A1Q9Y2W3 748 aa20.83■□□□□ 0.93
SDC1-203ENST00000403076 TESPA1A2RU30 521 aaPredicted RBP20.83■□□□□ 0.92
SDC1-203ENST00000403076 hCG_1984214I3L0E3 225 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 NAPAP54920 295 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 GUCY1B3Q02153 619 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 USH1GQ495M9 461 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 OTUD7BQ6GQQ9 843 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 FAM43AQ8N2R8 423 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 ZNF713Q8N859 430 aaPredicted RBP20.83■□□□□ 0.92
SDC1-203ENST00000403076 CCDC12Q8WUD4 166 aaPredicted RBP20.83■□□□□ 0.92
SDC1-203ENST00000403076 PTPN18Q99952 460 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 SLC38A10Q9HBR0 1119 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 RAVER2Q9HCJ3 691 aaKnown RBP20.83■□□□□ 0.92
SDC1-203ENST00000403076 GJB4Q9NTQ9 266 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 BARHL2Q9NY43 387 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 PCDHA1Q9Y5I3 950 aa20.83■□□□□ 0.92
SDC1-203ENST00000403076 STX6O43752 255 aa20.82■□□□□ 0.92
SDC1-203ENST00000403076 HERVK_113P62684 666 aa20.82■□□□□ 0.92
SDC1-203ENST00000403076 KIF23Q02241 960 aaPredicted RBP20.82■□□□□ 0.92
SDC1-203ENST00000403076 NOGQ13253 232 aa20.82■□□□□ 0.92
SDC1-203ENST00000403076 KRT40Q6A162 431 aa20.82■□□□□ 0.92
SDC1-203ENST00000403076 CCDC148Q8NFR7 591 aa20.82■□□□□ 0.92
SDC1-203ENST00000403076 SMCR8Q8TEV9 937 aaPredicted RBP20.82■□□□□ 0.92
SDC1-203ENST00000403076 SH3GLB2Q9NR46 395 aa20.82■□□□□ 0.92
SDC1-203ENST00000403076 STXBP3O00186 592 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 PPP1R11O60927 126 aaPredicted RBP20.81■□□□□ 0.92
SDC1-203ENST00000403076 PDIA4P13667 645 aaKnown RBP20.81■□□□□ 0.92
SDC1-203ENST00000403076 NLRP5P59047 1200 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 PLS1Q14651 629 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 MB21D1Q8N884 522 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 FBXO18Q8NFZ0 1043 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 PAGR1Q9BTK6 254 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 PNMA2Q9UL42 364 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 CCPG1Q9ULG6 757 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 ADAMTS5Q9UNA0 930 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 KCNJ14Q9UNX9 436 aa20.81■□□□□ 0.92
SDC1-203ENST00000403076 ICAM1P05362 532 aa20.8■□□□□ 0.92
SDC1-203ENST00000403076 CYP2C8P10632 490 aa20.8■□□□□ 0.92
SDC1-203ENST00000403076 HTRA3P83110 453 aa20.8■□□□□ 0.92
SDC1-203ENST00000403076 SAFBQ15424 915 aaKnown RBP eCLIP20.8■□□□□ 0.92
SDC1-203ENST00000403076 AGBL1Q96MI9 1066 aa20.8■□□□□ 0.92
SDC1-203ENST00000403076 AOC2O75106 756 aa20.79■□□□□ 0.92
SDC1-203ENST00000403076 GNL2Q13823 731 aaKnown RBP20.79■□□□□ 0.92
SDC1-203ENST00000403076 FOXD4L5Q5VV16 416 aaPredicted RBP20.79■□□□□ 0.92
SDC1-203ENST00000403076 MCTP1Q6DN14 999 aa20.79■□□□□ 0.92
SDC1-203ENST00000403076 FOXD4L4Q8WXT5 416 aaPredicted RBP20.79■□□□□ 0.92
SDC1-203ENST00000403076 ZIC5Q96T25 663 aa20.79■□□□□ 0.92
SDC1-203ENST00000403076 PARK7Q99497 189 aaKnown RBP20.79■□□□□ 0.92
SDC1-203ENST00000403076 CHMP5Q9NZZ3 219 aa20.79■□□□□ 0.92
SDC1-203ENST00000403076 CIZ1Q9ULV3 898 aaPredicted RBP20.79■□□□□ 0.92
SDC1-203ENST00000403076 SMCO2A6NFE2 343 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 IGF2BP3O00425 579 aaKnown RBP eCLIP20.78■□□□□ 0.921e-7■■□□□ 14.5
SDC1-203ENST00000403076 ALAS1P13196 640 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 OAZ1P54368 228 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 NUCB2P80303 420 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 PPP1R18Q6NYC8 613 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 LBX2Q6XYB7 198 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 IFNL1Q8IU54 200 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 GTF3C2Q8WUA4 911 aaPredicted RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 BRMS1Q9HCU9 246 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 C6orf50Q9HD87 102 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 MRPL11Q9Y3B7 192 aaKnown RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 ZNF536O15090 1300 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 ABCB11O95342 1321 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 WDR33Q9C0J8 1336 aaKnown RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 TAL1P17542 331 aaPredicted RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 CALML3P27482 149 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 DDIT3P35638 169 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 STAT3P40763 770 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 TMEM132BQ14DG7 1078 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 TAF1CQ15572 869 aaPredicted RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 SNRNP48Q6IEG0 339 aaKnown RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 TYW1BQ6NUM6 668 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 FAM177A1Q8N128 213 aaPredicted RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 REPS2Q8NFH8 660 aa20.78■□□□□ 0.92
SDC1-203ENST00000403076 ZCCHC17Q9NP64 241 aaKnown RBP20.78■□□□□ 0.92
SDC1-203ENST00000403076 RLFQ13129 1914 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 MMP1P03956 469 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 GNA11P29992 359 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 TM4SF4P48230 202 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 PKP1Q13835 747 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 PHF20Q9BVI0 1012 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 TEX13BQ9BXU2 312 aa20.77■□□□□ 0.92
SDC1-203ENST00000403076 HOMER2Q9NSB8 354 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms