RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TDO2P48775 406 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 PPP4CP60510 307 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 WWC2Q6AWC2 1192 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 RSBN1LQ6PCB5 846 aaPredicted RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 MAPKAPK5Q8IW41 473 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 PANX2Q96RD6 677 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 DESI2Q9BSY9 194 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 SCAF8Q9UPN6 1271 aaKnown RBP12.54□□□□□ -0.4
CUX1-204ENST00000393824 ADGRG1Q9Y653 693 aa12.54□□□□□ -0.4
CUX1-204ENST00000393824 LRRIQ3A6PVS8 624 aaPredicted RBP12.53□□□□□ -0.4
CUX1-204ENST00000393824 MINDY4BA8MYZ0 360 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 ANKRD65E5RJM6 399 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 PTPN21Q16825 1174 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 ZFPM1Q8IX07 1006 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 AFAP1L1Q8TED9 768 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.53□□□□□ -0.4
CUX1-204ENST00000393824 NAA15Q9BXJ9 866 aaKnown RBP12.53□□□□□ -0.4
CUX1-204ENST00000393824 LTBP3Q9NS15 1303 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 ZNF213O14771 459 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 PHACTR2O75167 634 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 SYF2O95926 243 aaKnown RBP12.53□□□□□ -0.4
CUX1-204ENST00000393824 WHAMMP3Q1A5X7 153 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 CDC42EP5Q6NZY7 148 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 MICALL1Q8N3F8 863 aa12.53□□□□□ -0.4
CUX1-204ENST00000393824 PRMT6Q96LA8 375 aaPredicted RBP12.53□□□□□ -0.4
CUX1-204ENST00000393824 SAP30BPQ9UHR5 308 aaKnown RBP12.53□□□□□ -0.4
CUX1-204ENST00000393824 CTAGE15A4D2H0 777 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 KIF1CO43896 1103 aaKnown RBP12.52□□□□□ -0.41
CUX1-204ENST00000393824 SHOX2O60902 331 aaPredicted RBP12.52□□□□□ -0.41
CUX1-204ENST00000393824 RNF40O75150 1001 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 PRDM1O75626 825 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 ERLIN2O94905 339 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 CTAGE8P0CG41 777 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 PLCD1P51178 756 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 GSTO1P78417 241 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 KIF23Q02241 960 aaPredicted RBP12.52□□□□□ -0.41
CUX1-204ENST00000393824 ALX1Q15699 326 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 IMMTQ16891 758 aaKnown RBP12.52□□□□□ -0.41
CUX1-204ENST00000393824 CTAGE6Q86UF2 777 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 CTAGE4Q8IX94 777 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 JDP2Q8WYK2 163 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 SUGT1Q9Y2Z0 365 aa12.52□□□□□ -0.41
CUX1-204ENST00000393824 CTAGE9A4FU28 777 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 FZD9O00144 591 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 GNAT2P19087 354 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 ANTXR2P58335 489 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 PICALMQ13492 652 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 PNOCQ13519 176 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 MTF1Q14872 753 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 NR1I3Q14994 352 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 RASGRP2Q7LDG7 609 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 FOXP4Q8IVH2 680 aaPredicted RBP12.51□□□□□ -0.41
CUX1-204ENST00000393824 TEKT1Q969V4 418 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 CRNKL1Q9BZJ0 848 aaKnown RBP12.51□□□□□ -0.41
CUX1-204ENST00000393824 MCM9Q9NXL9 1143 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 FLT1P17948 1338 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 CCDC196A0A1B0GTZ2 297 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 AKR1B15C9JRZ8 316 aaPredicted RBP12.51□□□□□ -0.41
CUX1-204ENST00000393824 RHOXF2BP0C7M4 288 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 BMP6P22004 513 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 USP8P40818 1118 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 RBM5P52756 815 aaKnown RBP eCLIP12.51□□□□□ -0.414e-7■■■□□ 19.1
CUX1-204ENST00000393824 FKBP1AP62942 108 aaKnown RBP12.51□□□□□ -0.41
CUX1-204ENST00000393824 PPARAQ07869 468 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 KIF4BQ2VIQ3 1234 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 OTUD7BQ6GQQ9 843 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 TMED8Q6PL24 325 aaPredicted RBP12.51□□□□□ -0.41
CUX1-204ENST00000393824 SHC4Q6S5L8 630 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 METTL16Q86W50 562 aaKnown RBP12.51□□□□□ -0.41
CUX1-204ENST00000393824 TEX11Q8IYF3 940 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 SLC44A5Q8NCS7 719 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 ENOX1Q8TC92 643 aaKnown RBP12.51□□□□□ -0.41
CUX1-204ENST00000393824 DYNLL2Q96FJ2 89 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 ZDHHC15Q96MV8 337 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 RHOXF2Q9BQY4 288 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 SENP2Q9HC62 589 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 LZTFL1Q9NQ48 299 aa12.51□□□□□ -0.41
CUX1-204ENST00000393824 B4E1Z4 1266 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 PPFIA3O75145 1194 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 LDHCP07864 332 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 MAP2K2P36507 400 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 PDE4BQ07343 736 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 ZNF569Q5MCW4 686 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 HHIPL2Q6UWX4 724 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 RAD9BQ6WBX8 426 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 CYB5R4Q7L1T6 521 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 ANKRD20A12PQ8NF67 263 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 KAT2BQ92831 832 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 VPS33BQ9H267 617 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 TDRD3Q9H7E2 651 aaKnown RBP12.5□□□□□ -0.41
CUX1-204ENST00000393824 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.5□□□□□ -0.41
CUX1-204ENST00000393824 USP40Q9NVE5 1235 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 HPS5Q9UPZ3 1129 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 PCDHA5Q9Y5H7 936 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 PSME4Q14997 1843 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 ZMYM6O95789 1325 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 SOWAHDA6NJG2 315 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 CPLX1O14810 134 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 BAG3O95817 575 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 HNRNPH1P31943 449 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms