RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CTAGE1Q96RT6 745 aa21.85■■□□□ 1.09
COL9A3-201ENST00000343916 CRAMP1Q96RY5 1269 aa21.85■■□□□ 1.09
COL9A3-201ENST00000343916 RWDD2AQ9UIY3 292 aa21.85■■□□□ 1.09
COL9A3-201ENST00000343916 PHLPP2Q6ZVD8 1323 aa21.85■■□□□ 1.09
COL9A3-201ENST00000343916 PPEF1O14829 653 aaPredicted RBP21.85■■□□□ 1.09
COL9A3-201ENST00000343916 SLF2Q8IX21 1173 aa21.85■■□□□ 1.09
COL9A3-201ENST00000343916 VPS16Q9H269 839 aa21.85■■□□□ 1.09
COL9A3-201ENST00000343916 TRIM49BA6NDI0 452 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 ERCC6LQ2NKX8 1250 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 FILIP1LQ4L180 1135 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 PPFIBP1Q86W92 1011 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 LRRC47Q8N1G4 583 aaKnown RBP21.84■■□□□ 1.09
COL9A3-201ENST00000343916 GTPBP4Q9BZE4 634 aaKnown RBP21.84■■□□□ 1.09
COL9A3-201ENST00000343916 CGNQ9P2M7 1197 aaKnown RBP21.84■■□□□ 1.09
COL9A3-201ENST00000343916 SEC63Q9UGP8 760 aaKnown RBP21.84■■□□□ 1.09
COL9A3-201ENST00000343916 TUBB4AP04350 444 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 CASP14P31944 242 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 SLC27A3Q5K4L6 730 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 CERS5Q8N5B7 392 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 WDR24Q96S15 920 aa21.84■■□□□ 1.09
COL9A3-201ENST00000343916 DDX4Q9NQI0 724 aaKnown RBP21.84■■□□□ 1.09
COL9A3-201ENST00000343916 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.84■■□□□ 1.098e-7■□□□□ 8.1
COL9A3-201ENST00000343916 URI1O94763 535 aaPredicted RBP21.83■■□□□ 1.09
COL9A3-201ENST00000343916 KMT5BQ4FZB7 885 aa21.83■■□□□ 1.09
COL9A3-201ENST00000343916 RMND1Q9NWS8 449 aa21.83■■□□□ 1.09
COL9A3-201ENST00000343916 TAB2Q9NYJ8 693 aa21.83■■□□□ 1.09
COL9A3-201ENST00000343916 BIN2Q9UBW5 565 aaPredicted RBP21.83■■□□□ 1.09
COL9A3-201ENST00000343916 N4BP3O15049 544 aa21.83■■□□□ 1.08
COL9A3-201ENST00000343916 GYPCP04921 128 aa21.83■■□□□ 1.08
COL9A3-201ENST00000343916 PDHBP11177 359 aa21.83■■□□□ 1.08
COL9A3-201ENST00000343916 NONOQ15233 471 aaKnown RBP eCLIP21.83■■□□□ 1.08
COL9A3-201ENST00000343916 TXNRD1Q16881 649 aa21.83■■□□□ 1.08
COL9A3-201ENST00000343916 JAKMIP3Q5VZ66 844 aa21.83■■□□□ 1.08
COL9A3-201ENST00000343916 PROM2Q8N271 834 aa21.83■■□□□ 1.08
COL9A3-201ENST00000343916 FXR1P51114 621 aaKnown RBP eCLIP21.82■■□□□ 1.08
COL9A3-201ENST00000343916 PMS1P54277 932 aaKnown RBP21.82■■□□□ 1.08
COL9A3-201ENST00000343916 C6orf50Q9HD87 102 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 TMEM260Q9NX78 707 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 KLRG2A4D1S0 409 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-201ENST00000343916 AKR1B1P15121 316 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 SCNN1DP51172 638 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 GNG11P61952 73 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 DOK7Q18PE1 504 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 FBXO38Q6PIJ6 1188 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 RAD9BQ6WBX8 426 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 KRT25Q7Z3Z0 450 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 CCDC12Q8WUD4 166 aaPredicted RBP21.82■■□□□ 1.08
COL9A3-201ENST00000343916 PANX2Q96RD6 677 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 CCSER1Q9C0I3 900 aa21.82■■□□□ 1.08
COL9A3-201ENST00000343916 MRPL44Q9H9J2 332 aaKnown RBP21.82■■□□□ 1.08
COL9A3-201ENST00000343916 A0A0U1RQJ8 604 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 KCNJ18B7U540 433 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 OR52Z1P0C646 297 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 SLURP2P0DP57 97 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 GNA11P29992 359 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 KCNJ12Q14500 433 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 TCP11X2Q5H9J9 407 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 SOGA3Q5TF21 947 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 SP8Q8IXZ3 490 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 TBCKQ8TEA7 893 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 ATRIPQ8WXE1 791 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 FEZ1Q99689 392 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 MTMR4Q9NYA4 1195 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 PARP3Q9Y6F1 533 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 MFAP3LO75121 409 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 PLCG1P19174 1290 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 DPP8Q6V1X1 898 aaPredicted RBP21.81■■□□□ 1.08
COL9A3-201ENST00000343916 NEK8Q86SG6 692 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 COA7Q96BR5 231 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 IRX2Q9BZI1 471 aaPredicted RBP21.81■■□□□ 1.08
COL9A3-201ENST00000343916 KBTBD4Q9NVX7 518 aa21.81■■□□□ 1.08
COL9A3-201ENST00000343916 LIMA1Q9UHB6 759 aaKnown RBP21.81■■□□□ 1.08
COL9A3-201ENST00000343916 TTF2Q9UNY4 1162 aaKnown RBP21.81■■□□□ 1.08
COL9A3-201ENST00000343916 LAD1O00515 517 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 KLRC4O43908 158 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 PRPHP41219 470 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 TECP42680 631 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 COPB1P53618 953 aaKnown RBP21.8■■□□□ 1.08
COL9A3-201ENST00000343916 LRRC10BA6NIK2 292 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 RNF225M0QZC1 329 aaPredicted RBP21.8■■□□□ 1.08
COL9A3-201ENST00000343916 NOVP48745 357 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 GABPAQ06546 454 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 CABP7Q86V35 215 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 ADSSL1Q8N142 457 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 OGFRQ9NZT2 677 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 ATP6V0A2Q9Y487 856 aa21.8■■□□□ 1.08
COL9A3-201ENST00000343916 LTBP1Q14766 1721 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 REXO1Q8N1G1 1221 aaKnown RBP21.79■■□□□ 1.08
COL9A3-201ENST00000343916 EEF2KMTQ96G04 330 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 ZC3H12CQ9C0D7 883 aaKnown RBP21.79■■□□□ 1.08
COL9A3-201ENST00000343916 COA1Q9GZY4 146 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 LZTFL1Q9NQ48 299 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 POTEDQ86YR6 584 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 IRF2BP1Q8IU81 584 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 ZNF397Q8NF99 534 aaPredicted RBP21.79■■□□□ 1.08
COL9A3-201ENST00000343916 RIOX1Q9H6W3 641 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 GPCPD1Q9NPB8 672 aa21.79■■□□□ 1.08
COL9A3-201ENST00000343916 GOLGA6L9A6NEM1 432 aa21.78■■□□□ 1.08
COL9A3-201ENST00000343916 CCDC175P0C221 793 aa21.78■■□□□ 1.08
COL9A3-201ENST00000343916 CASQ1P31415 396 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms