RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CACNA2D3Q8IZS8 1091 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 MREGQ8N565 214 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 CCDC155Q8N6L0 562 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 TEX9Q8N6V9 391 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 KLHL23Q8NBE8 558 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ATRIPQ8WXE1 791 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ADD3Q9UEY8 706 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 COL24A1Q17RW2 1714 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 PARP4Q9UKK3 1724 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 FRMD3A2A2Y4 597 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 E7EVH7 732 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 CDKL5O76039 1030 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 RTN3O95197 1032 aaPredicted RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 GYPCP04921 128 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ARID4AP29374 1257 aaPredicted RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 PEX19P40855 299 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 EXOSC10Q01780 885 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ROR2Q01974 943 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 PAK2Q13177 524 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 SEPT2Q15019 361 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 RRS1Q15050 365 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 KIAA0753Q2KHM9 967 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 MIS18BP1Q6P0N0 1132 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 BZW1Q7L1Q6 419 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 SDCCAG8Q86SQ7 713 aaPredicted RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 PLPP6Q8IY26 295 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 PARD3BQ8TEW8 1205 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ATP6V1G3Q96LB4 118 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ALS2CR12Q96Q35 445 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 NOD2Q9HC29 1040 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 SLC39A2Q9NP94 309 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 STRN4Q9NRL3 753 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 HAUS2Q9NVX0 235 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ZNHIT6Q9NWK9 470 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 CHCHD3Q9NX63 227 aaKnown RBP9.05□□□□□ -0.96
ATG4A-201ENST00000343524 STIM2Q9P246 746 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 SWAP70Q9UH65 585 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 TAF6LQ9Y6J9 622 aa9.05□□□□□ -0.96
ATG4A-201ENST00000343524 ALS2Q96Q42 1657 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 TRPM3Q9HCF6 1732 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 C5orf60A6NFR6 353 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 ARHGAP33O14559 1287 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 CPLX1O14810 134 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 NDUFA10O95299 355 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 POLR3DP05423 398 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 PRLRP16471 622 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 CYLC1P35663 651 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 SCTRP47872 440 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 GCLCP48506 637 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 CCT2P78371 535 aaKnown RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 HDLBPQ00341 1268 aaKnown RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 PDE4BQ07343 736 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 IMMTQ16891 758 aaKnown RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 CCDC122Q5T0U0 273 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 BEND3Q5T5X7 828 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 GKAP1Q5VSY0 366 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 SHC4Q6S5L8 630 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 PTF1AQ7RTS3 328 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 CACNA2D4Q7Z3S7 1137 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 FAM228AQ86W67 206 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 IFT20Q8IY31 132 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 NSMCE1Q8WV22 266 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 ZFAND2BQ8WV99 257 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 ACSBG1Q96GR2 724 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 RNPC3Q96LT9 517 aaKnown RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 NUP88Q99567 741 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 RABEP2Q9H5N1 569 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 SUDS3Q9H7L9 328 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 GUCA1BQ9UMX6 200 aa9.04□□□□□ -0.96
ATG4A-201ENST00000343524 EPN1Q9Y6I3 576 aaPredicted RBP9.04□□□□□ -0.96
ATG4A-201ENST00000343524 GMNCA6NCL1 334 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 H7C1W4 665 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 COQ9O75208 318 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 AP1G2O75843 785 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ATP1A1P05023 1023 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 RPSAP08865 295 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 FDPSP14324 419 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 SARSP49591 514 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ERVK-24P63145 666 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 COL9A3Q14050 684 aaPredicted RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 KCNB1Q14721 858 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 CCDC57Q2TAC2 916 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 CDKAL1Q5VV42 579 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 CWF19L1Q69YN2 538 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 LRIG3Q6UXM1 1119 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ANKS4BQ8N8V4 417 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 KRI1Q8N9T8 703 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 WHAMMQ8TF30 809 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 NUP133Q8WUM0 1156 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 ZBTB10Q96DT7 871 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 THRAP3Q9Y2W1 955 aaKnown RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 WDR19Q8NEZ3 1342 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 PALLDQ8WX93 1383 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 EME2A4GXA9 379 aaPredicted RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 PDLIM1O00151 329 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 PPP1R12BO60237 982 aaPredicted RBP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 CAND2O75155 1236 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 SASH1O94885 1247 aa9.03□□□□□ -0.96
ATG4A-201ENST00000343524 SSBP05455 408 aaKnown RBP eCLIP9.03□□□□□ -0.96
ATG4A-201ENST00000343524 PAEPP09466 180 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms