RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 LINC00116Q8NCU8 138 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 JADE2Q9NQC1 790 aa25.08■■□□□ 1.61
TRIM28-202ENST00000341753 B4DLN1 442 aa25.07■■□□□ 1.6
TRIM28-202ENST00000341753 TSR1Q2NL82 804 aaKnown RBP25.07■■□□□ 1.6
TRIM28-202ENST00000341753 PLCH1Q4KWH8 1693 aa25.07■■□□□ 1.6
TRIM28-202ENST00000341753 BMP15O95972 392 aa25.07■■□□□ 1.6
TRIM28-202ENST00000341753 EZH2Q15910 746 aaKnown RBP25.07■■□□□ 1.6
TRIM28-202ENST00000341753 TIAM2Q8IVF5 1701 aa25.07■■□□□ 1.6
TRIM28-202ENST00000341753 PNPLA7Q6ZV29 1317 aa25.07■■□□□ 1.6
TRIM28-202ENST00000341753 PP2D1A8MPX8 630 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 NMT2O60551 498 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 NLRP5P59047 1200 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 PAPD7Q5XG87 772 aaKnown RBP25.06■■□□□ 1.6
TRIM28-202ENST00000341753 TTC19Q6DKK2 380 aaPredicted RBP25.06■■□□□ 1.6
TRIM28-202ENST00000341753 SMCR8Q8TEV9 937 aaPredicted RBP25.06■■□□□ 1.6
TRIM28-202ENST00000341753 DRC1Q96MC2 740 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 DNAJC7Q99615 494 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 KAT14Q9H8E8 782 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 LGALS16A8MUM7 142 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 GTF2A1P52655 376 aaPredicted RBP25.06■■□□□ 1.6
TRIM28-202ENST00000341753 FAM182BQ5T319 152 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 SPATA31A5Q5VU36 1347 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 SPATA31A7Q8IWB4 1347 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 KLRK1P26718 216 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 STAT6P42226 847 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 FKBP15Q5T1M5 1219 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 ICE2Q659A1 982 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 RASSF8Q8NHQ8 419 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 TRIM47Q96LD4 638 aa25.06■■□□□ 1.6
TRIM28-202ENST00000341753 IDEP14735 1019 aa25.05■■□□□ 1.6
TRIM28-202ENST00000341753 SRBD1Q8N5C6 995 aaKnown RBP25.05■■□□□ 1.6
TRIM28-202ENST00000341753 HDAC7Q8WUI4 952 aa25.05■■□□□ 1.6
TRIM28-202ENST00000341753 CCT5P48643 541 aa25.05■■□□□ 1.6
TRIM28-202ENST00000341753 DNAJC21Q5F1R6 531 aaKnown RBP25.05■■□□□ 1.6
TRIM28-202ENST00000341753 CCNI2Q6ZMN8 369 aaPredicted RBP25.05■■□□□ 1.6
TRIM28-202ENST00000341753 SLC51AQ86UW1 340 aa25.05■■□□□ 1.6
TRIM28-202ENST00000341753 PPM1EQ8WY54 764 aa25.05■■□□□ 1.6
TRIM28-202ENST00000341753 RRP36Q96EU6 259 aaKnown RBP25.05■■□□□ 1.6
TRIM28-202ENST00000341753 JRKLQ9Y4A0 524 aa25.05■■□□□ 1.6
TRIM28-202ENST00000341753 RCAN1P53805 252 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 DYNLL1P63167 89 aaKnown RBP25.04■■□□□ 1.6
TRIM28-202ENST00000341753 PCMTD1Q96MG8 357 aaPredicted RBP25.04■■□□□ 1.6
TRIM28-202ENST00000341753 PSMB7Q99436 277 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 CAPN11Q9UMQ6 739 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 JAG2Q9Y219 1238 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 WNK3Q9BYP7 1800 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 H7C1D1 291 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 MATR3P43243 847 aaKnown RBP eCLIP25.04■■□□□ 1.6
TRIM28-202ENST00000341753 TROAPQ12815 778 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 RASGRP4Q8TDF6 673 aa25.04■■□□□ 1.6
TRIM28-202ENST00000341753 CELF1Q92879 486 aaKnown RBP25.04■■□□□ 1.6
TRIM28-202ENST00000341753 CDCA7Q9BWT1 371 aaPredicted RBP25.04■■□□□ 1.6
TRIM28-202ENST00000341753 KRT86O43790 486 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 TRIM21P19474 475 aaKnown RBP25.03■■□□□ 1.6
TRIM28-202ENST00000341753 ADSSL1Q8N142 457 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 MICALL1Q8N3F8 863 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 FAM76AQ8TAV0 307 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 ZNF507Q8TCN5 953 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 NHEJ1Q9H9Q4 299 aaPredicted RBP25.03■■□□□ 1.6
TRIM28-202ENST00000341753 RMND1Q9NWS8 449 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 SMARCAL1Q9NZC9 954 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 GOLGA6CA6NDK9 693 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 GOLGA6BA6NDN3 693 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 GOLGA6DP0CG33 693 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 MCM3P25205 808 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 CKAP4Q07065 602 aaKnown RBP25.03■■□□□ 1.6
TRIM28-202ENST00000341753 TMTC3Q6ZXV5 915 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 KRT26Q7Z3Y9 468 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 GOLGA6AQ9NYA3 693 aa25.03■■□□□ 1.6
TRIM28-202ENST00000341753 SRP68Q9UHB9 627 aaKnown RBP25.03■■□□□ 1.6
TRIM28-202ENST00000341753 SND1Q7KZF4 910 aaKnown RBP eCLIP25.02■■□□□ 1.6
TRIM28-202ENST00000341753 CNTNAP5Q8WYK1 1306 aa25.02■■□□□ 1.6
TRIM28-202ENST00000341753 MAGEB6P1A0A0J9YX57 407 aa25.02■■□□□ 1.6
TRIM28-202ENST00000341753 KRT83P78385 493 aa25.02■■□□□ 1.6
TRIM28-202ENST00000341753 THRAP3Q9Y2W1 955 aaKnown RBP25.02■■□□□ 1.6
TRIM28-202ENST00000341753 PHLPP1O60346 1717 aa25.01■■□□□ 1.59
TRIM28-202ENST00000341753 TARSL2A2RTX5 802 aaKnown RBP25.01■■□□□ 1.59
TRIM28-202ENST00000341753 NKRFO15226 690 aaKnown RBP eCLIP25.01■■□□□ 1.594e-8■□□□□ 11.1
TRIM28-202ENST00000341753 SLC7A5Q01650 507 aa25.01■■□□□ 1.59
TRIM28-202ENST00000341753 TBC1D9BQ66K14 1250 aa25.01■■□□□ 1.59
TRIM28-202ENST00000341753 ANKRD18AQ8IVF6 992 aa25.01■■□□□ 1.59
TRIM28-202ENST00000341753 COL1A1P02452 1464 aaPredicted RBP25.01■■□□□ 1.59
TRIM28-202ENST00000341753 RASSF10A6NK89 507 aa25.01■■□□□ 1.59
TRIM28-202ENST00000341753 MAGEC2Q9UBF1 373 aaPredicted RBP25.01■■□□□ 1.59
TRIM28-202ENST00000341753 PLEKP08567 350 aaPredicted RBP25■■□□□ 1.59
TRIM28-202ENST00000341753 LIG3P49916 1009 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 FAM47AQ5JRC9 791 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 MTA3Q9BTC8 594 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 PDS5AQ29RF7 1337 aaKnown RBP25■■□□□ 1.59
TRIM28-202ENST00000341753 AHDC1Q5TGY3 1603 aaPredicted RBP25■■□□□ 1.59
TRIM28-202ENST00000341753 IRAK1P51617 712 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 SLC4A8Q2Y0W8 1093 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 EHD2Q9NZN4 543 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 LRWD1Q9UFC0 647 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 ARAP2Q8WZ64 1704 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 MYH2Q9UKX2 1941 aa25■■□□□ 1.59
TRIM28-202ENST00000341753 IPO7O95373 1038 aaKnown RBP24.99■■□□□ 1.59
TRIM28-202ENST00000341753 CYLC1P35663 651 aaPredicted RBP24.99■■□□□ 1.59
TRIM28-202ENST00000341753 IQCA1Q86XH1 822 aa24.99■■□□□ 1.59
TRIM28-202ENST00000341753 GPKOWQ92917 476 aaPredicted RBP eCLIP24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms