RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 PLCD4Q9BRC7 762 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 TNS3Q68CZ2 1445 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 UBAP1LF5GYI3 381 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 KRT86O43790 486 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 MFAP3LO75121 409 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 TRIM28Q13263 835 aaKnown RBP13.34□□□□□ -0.27
USP1-201ENST00000339950 TMEM266Q2M3C6 531 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 TBCKQ8TEA7 893 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 C6orf50Q9HD87 102 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 MYO6Q9UM54 1294 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 NCK2O43639 380 aa13.33□□□□□ -0.27
USP1-201ENST00000339950 TAL1P17542 331 aaPredicted RBP13.33□□□□□ -0.27
USP1-201ENST00000339950 SPAG1Q07617 926 aa13.33□□□□□ -0.27
USP1-201ENST00000339950 ZSCAN26Q16670 478 aa13.33□□□□□ -0.27
USP1-201ENST00000339950 CC2D1AQ6P1N0 951 aaPredicted RBP13.33□□□□□ -0.27
USP1-201ENST00000339950 DPP8Q6V1X1 898 aaPredicted RBP13.33□□□□□ -0.27
USP1-201ENST00000339950 MAATS1Q7Z4T9 603 aa13.33□□□□□ -0.27
USP1-201ENST00000339950 CCDC43Q96MW1 224 aaKnown RBP13.33□□□□□ -0.27
USP1-201ENST00000339950 SPAG5Q96R06 1193 aa13.33□□□□□ -0.27
USP1-201ENST00000339950 CCDC113Q9H0I3 377 aa13.33□□□□□ -0.27
USP1-201ENST00000339950 HPSEQ9Y251 543 aa13.33□□□□□ -0.27
USP1-201ENST00000339950 TCRBV5S4A2TA0A5A2 114 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 RNF225M0QZC1 329 aaPredicted RBP13.33□□□□□ -0.28
USP1-201ENST00000339950 HGSO14964 777 aaPredicted RBP13.33□□□□□ -0.28
USP1-201ENST00000339950 USO1O60763 962 aaKnown RBP13.33□□□□□ -0.28
USP1-201ENST00000339950 HERC4Q5GLZ8 1057 aaPredicted RBP13.33□□□□□ -0.28
USP1-201ENST00000339950 TMTC1Q8IUR5 882 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.33□□□□□ -0.28
USP1-201ENST00000339950 CNOT6LQ96LI5 555 aaKnown RBP13.33□□□□□ -0.28
USP1-201ENST00000339950 CDC23Q9UJX2 597 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 NWD1Q149M9 1564 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 PAFAH1B1P43034 410 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 VSNL1P62760 191 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 GRIK5Q16478 980 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 TXNRD1Q16881 649 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 MICALL1Q8N3F8 863 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 GPR161Q8N6U8 529 aaKnown RBP13.33□□□□□ -0.28
USP1-201ENST00000339950 MLXIPQ9HAP2 919 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 FBXO3Q9UK99 471 aa13.33□□□□□ -0.28
USP1-201ENST00000339950 PACSIN2Q9UNF0 486 aaPredicted RBP13.33□□□□□ -0.28
USP1-201ENST00000339950 ESYT3A0FGR9 886 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 GYPCP04921 128 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 PLEKP08567 350 aaPredicted RBP13.32□□□□□ -0.28
USP1-201ENST00000339950 PLA2G4AP47712 749 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 NAA35Q5VZE5 725 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 KRT79Q5XKE5 535 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 KIAA0825Q8IV33 1275 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 GOPCQ9HD26 462 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 DDX39AO00148 427 aaKnown RBP13.32□□□□□ -0.28
USP1-201ENST00000339950 HPDP32754 393 aaPredicted RBP13.32□□□□□ -0.28
USP1-201ENST00000339950 PMS1P54277 932 aaKnown RBP13.32□□□□□ -0.28
USP1-201ENST00000339950 RASSF7Q02833 373 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 NONOQ15233 471 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP1-201ENST00000339950 TRIM65Q6PJ69 517 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 FAM196AQ6ZSG2 479 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 SRGAP1Q7Z6B7 1085 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 TAX1BP1Q86VP1 789 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 ZNF34Q8IZ26 560 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 FAM205AQ6ZU69 1335 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 TMEM110-MUSTN1A8MSY1 372 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 GTPBP6O43824 516 aaPredicted RBP13.32□□□□□ -0.28
USP1-201ENST00000339950 MOCS3O95396 460 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 MAGEA1P43355 309 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 SP4Q02446 784 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 TXLNBQ8N3L3 684 aa13.32□□□□□ -0.28
USP1-201ENST00000339950 SFI1A8K8P3 1242 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 PRPF3O43395 683 aaKnown RBP13.31□□□□□ -0.28
USP1-201ENST00000339950 BMP15O95972 392 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 SV2BQ7L1I2 683 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 HDXQ7Z353 690 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 REXO1Q8N1G1 1221 aaKnown RBP13.31□□□□□ -0.28
USP1-201ENST00000339950 GSDMAQ96QA5 445 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 SAR1BQ9Y6B6 198 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 AKAP12Q02952 1782 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 UBR1Q8IWV7 1749 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 USP17L5A8MUK1 530 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 SASH3O75995 380 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 TROAPQ12815 778 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 CALCRLQ16602 461 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 TCP11X2Q5H9J9 407 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 IFIH1Q9BYX4 1025 aaKnown RBP13.31□□□□□ -0.28
USP1-201ENST00000339950 GOLPH3Q9H4A6 298 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 TCEAL9Q9UHQ7 104 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 SORBS3O60504 671 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 CAMTA2O94983 1202 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 NDUFA10O95299 355 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 APBA1Q02410 837 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 STK4Q13043 487 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 RNF187Q5TA31 235 aaPredicted RBP13.31□□□□□ -0.28
USP1-201ENST00000339950 UHMK1Q8TAS1 419 aaKnown RBP13.31□□□□□ -0.28
USP1-201ENST00000339950 PNKPQ96T60 521 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 TMEM47Q9BQJ4 181 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.31□□□□□ -0.28
USP1-201ENST00000339950 JCADQ9P266 1359 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 PHLPP2Q6ZVD8 1323 aa13.31□□□□□ -0.28
USP1-201ENST00000339950 KIAA0754O94854 1291 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 FTCDO95954 541 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 ATP1A1P05023 1023 aaKnown RBP13.3□□□□□ -0.28
USP1-201ENST00000339950 LDHCP07864 332 aa13.3□□□□□ -0.28
USP1-201ENST00000339950 MKRN4PQ13434 485 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms