RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 JAKMIP3Q5VZ66 844 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 TRIM65Q6PJ69 517 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 IGSF22Q8N9C0 903 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 CPLX3Q8WVH0 158 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 USP40Q9NVE5 1235 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 RMND1Q9NWS8 449 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 DNAI1Q9UI46 699 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 RWDD2AQ9UIY3 292 aa16.78■□□□□ 0.28
CLCNKA-201ENST00000331433 ADAMTSL1Q8N6G6 1762 aa16.77■□□□□ 0.28
CLCNKA-201ENST00000331433 PRCPP42785 496 aa16.77■□□□□ 0.28
CLCNKA-201ENST00000331433 RBL2Q08999 1139 aa16.77■□□□□ 0.28
CLCNKA-201ENST00000331433 PPP4R3BQ5MIZ7 849 aa16.77■□□□□ 0.28
CLCNKA-201ENST00000331433 TMEM260Q9NX78 707 aa16.77■□□□□ 0.28
CLCNKA-201ENST00000331433 PLIN4Q96Q06 1357 aa16.77■□□□□ 0.28
CLCNKA-201ENST00000331433 LAD1O00515 517 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 FANCGO15287 622 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 OR52Z1P0C646 297 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 NPR1P16066 1061 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 PBX1P40424 430 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 PRPHP41219 470 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 KRT31Q15323 416 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 NEK8Q86SG6 692 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 FCHSD1Q86WN1 690 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 CREBRFQ8IUR6 639 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 FAM177A1Q8N128 213 aaPredicted RBP16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 TBCKQ8TEA7 893 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 CTAGE1Q96RT6 745 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 RIOX1Q9H6W3 641 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 MYH8P13535 1937 aa16.77■□□□□ 0.27
CLCNKA-201ENST00000331433 AKR1B15C9JRZ8 316 aaPredicted RBP16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 ZSCAN12O43309 604 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 REXO1Q8N1G1 1221 aaKnown RBP16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 NLGN1Q8N2Q7 840 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 COA7Q96BR5 231 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 DESI2Q9BSY9 194 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 CCDC94Q9BW85 323 aaPredicted RBP16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 CCSER1Q9C0I3 900 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 L2HGDHQ9H9P8 463 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 GPCPD1Q9NPB8 672 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 SERPINB13Q9UIV8 391 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 SUGT1Q9Y2Z0 365 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 SLU7O95391 586 aaKnown RBP16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 SMARCA1P28370 1054 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 MTF1Q14872 753 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 FILIP1LQ4L180 1135 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 KCNQ5Q9NR82 932 aa16.76■□□□□ 0.27
CLCNKA-201ENST00000331433 TRIM49BA6NDI0 452 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 MMP10P09238 476 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 PLCG1P19174 1290 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 KMT5BQ4FZB7 885 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 CDC42EP5Q6NZY7 148 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 CABP7Q86V35 215 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 PPFIBP1Q86W92 1011 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 LRRN4CLQ8ND94 238 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 VPS16Q9H269 839 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 KBTBD4Q9NVX7 518 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 IGKV6D-41A0A0C4DH26 115 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 SOWAHDA6NJG2 315 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 G3V3G9 751 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 KLRC4O43908 158 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 TECP42680 631 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 NFIAQ12857 509 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 DCAF8Q5TAQ9 597 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 MSL1Q68DK7 614 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 POTEDQ86YR6 584 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 ERO1AQ96HE7 468 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 DBNDD1Q9H9R9 158 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 TAB2Q9NYJ8 693 aa16.75■□□□□ 0.27
CLCNKA-201ENST00000331433 N4BP3O15049 544 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 SHMT1P34896 483 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 LIMA1Q9UHB6 759 aaKnown RBP16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 KCNJ18B7U540 433 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 TTLL1O95922 423 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 TUBB4AP04350 444 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 SNHG28P0DPA3 235 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 ALDH1B1P30837 517 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 CASP14P31944 242 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 PMS1P54277 932 aaKnown RBP16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 ATP2B2Q01814 1243 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 KCNJ12Q14500 433 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 ELF2Q15723 593 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 ASPRV1Q53RT3 343 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 CCDC93Q567U6 631 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 TCP11X2Q5H9J9 407 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 APOBEC3HQ6NTF7 200 aaKnown RBP16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 ADSSL1Q8N142 457 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 AKT1S1Q96B36 256 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 PANX2Q96RD6 677 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 PCDHAC2Q9Y5I4 1007 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 PHLPP2Q6ZVD8 1323 aa16.74■□□□□ 0.27
CLCNKA-201ENST00000331433 COL11A2P13942 1736 aaPredicted RBP16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 ESYT2A0FGR8 921 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 MPHOSPH10O00566 681 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 GYPCP04921 128 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 ZFPM1Q8IX07 1006 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 TEKT1Q969V4 418 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 QSER1Q2KHR3 1735 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 LRRC10BA6NIK2 292 aa16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 COPB1P53618 953 aaKnown RBP16.73■□□□□ 0.27
CLCNKA-201ENST00000331433 CACNB3P54284 484 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms