RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 A0A0G2JND7 137 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 EXOC3O60645 756 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 TSTA3Q13630 321 aaPredicted RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 VPS54Q9P1Q0 977 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 SFMBT1Q9UHJ3 866 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 MLXIPLQ9NP71 852 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ZNF229Q9UJW7 825 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ADAM21Q9UKJ8 722 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ABCC5O15440 1437 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 CCDC195A0A1B0GUA6 201 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 SGK1O00141 431 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ARHGEF9O43307 516 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ACSL3O95573 720 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 POLR3CQ9BUI4 534 aaPredicted RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 CAPN11Q9UMQ6 739 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 UBE3AQ05086 875 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 ANKRD35Q8N283 1001 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 OGFOD1Q8N543 542 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 TRAIPQ9BWF2 469 aa9.54□□□□□ -0.88
USF3-201ENST00000316407 V9GY48 417 aaPredicted RBP9.54□□□□□ -0.88
USF3-201ENST00000316407 CALR3Q96L12 384 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 TYW1Q9NV66 732 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 HNRNPCL2B2RXH8 293 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 HNRNPCL1O60812 293 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 GGCXP38435 758 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 CCDC152Q4G0S7 254 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 DCTPP1Q9H773 170 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 GINS2Q9Y248 185 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 RBL2Q08999 1139 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 CFAP36Q96G28 342 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.53□□□□□ -0.88
USF3-201ENST00000316407 NPR1P16066 1061 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 PRG4Q92954 1404 aaPredicted RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 INHBAP08476 426 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 MRPS15P82914 257 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 ATP8B2P98198 1209 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 DEUP1Q05D60 604 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 ZBTB40Q9NUA8 1239 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 SYNJ2BP-COX16A0A087WUM0 186 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 FTCDO95954 541 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 GNAQP50148 359 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 ABCB6Q9NP58 842 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 COX16Q9P0S2 106 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 FBXO2Q9UK22 296 aaPredicted RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 IL16Q14005 1332 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 USH1GQ495M9 461 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 TSPYL6Q8N831 410 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 ENOX1Q8TC92 643 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 ANGEL1Q9UNK9 670 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 ITSN2Q9NZM3 1697 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 PRDM1O75626 825 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 SERPINI2O75830 405 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 GIMAP4Q9NUV9 329 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 EPN1Q9Y6I3 576 aaPredicted RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 B4DLN1 442 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 DEXIO95424 95 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 GSPT1P15170 499 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 POLR2FP61218 127 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 CTDSPL2Q05D32 466 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 CCDC84Q86UT8 332 aaPredicted RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 ARHGAP45Q92619 1136 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 NAP1L4Q99733 375 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 CD19P15391 556 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 GRK7Q8WTQ7 553 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 NCAPGQ9BPX3 1015 aa9.53□□□□□ -0.88
USF3-201ENST00000316407 ELAC2Q9BQ52 826 aaKnown RBP9.53□□□□□ -0.88
USF3-201ENST00000316407 MBD4O95243 580 aa9.52□□□□□ -0.88
USF3-201ENST00000316407 LMBR1LQ6UX01 489 aa9.52□□□□□ -0.88
USF3-201ENST00000316407 RGS9BPQ6ZS82 235 aa9.52□□□□□ -0.88
USF3-201ENST00000316407 SYNJ2O15056 1496 aa9.52□□□□□ -0.88
USF3-201ENST00000316407 C11orf57Q6ZUT1 292 aaPredicted RBP9.52□□□□□ -0.88
USF3-201ENST00000316407 NME8Q8N427 588 aa9.52□□□□□ -0.88
USF3-201ENST00000316407 PSPC1Q8WXF1 523 aaKnown RBP9.52□□□□□ -0.88
USF3-201ENST00000316407 CCDC68Q9H2F9 335 aa9.52□□□□□ -0.88
USF3-201ENST00000316407 ARHGAP26Q9UNA1 814 aa9.52□□□□□ -0.88
USF3-201ENST00000316407 TCP11X2Q5H9J9 407 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 TRIM56Q9BRZ2 755 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 SERTAD1Q9UHV2 236 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 XRCC5P13010 732 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 SEPT2Q15019 361 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 SPZ1Q9BXG8 430 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 ZCCHC17Q9NP64 241 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 KITP10721 976 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 SLC8A3P57103 927 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 HABP4Q5JVS0 413 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 PARP9Q8IXQ6 854 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 EIF2AQ9BY44 585 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 ACTR5Q9H9F9 607 aaPredicted RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 DNAJC17Q9NVM6 304 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 TRPC5Q9UL62 973 aaPredicted RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 PAIP2BQ9ULR5 123 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 NESP48681 1621 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 EIF2AK4Q9P2K8 1649 aaKnown RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 GNAT2P19087 354 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 CDR2Q01850 454 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 MAPKBP1O60336 1514 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 ITKQ08881 620 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 PLCB4Q15147 1175 aa9.52□□□□□ -0.89
USF3-201ENST00000316407 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.52□□□□□ -0.89
USF3-201ENST00000316407 CDC23Q9UJX2 597 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms