RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 IGDCC4Q8TDY8 1250 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 KRT23Q9C075 422 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.35■□□□□ 0.215e-6■■■■■ 50.2
PTPN9-201ENST00000306726 MAGEB6P1A0A0J9YX57 407 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 SMIM23A6NLE4 172 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 PAK1Q13153 545 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 INF2Q27J81 1249 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 MAP9Q49MG5 647 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 CCDC93Q567U6 631 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 ODF2Q5BJF6 829 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 CACNA2D4Q7Z3S7 1137 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 NLRP3Q96P20 1036 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 ALDH8A1Q9H2A2 487 aaPredicted RBP16.35■□□□□ 0.21
PTPN9-201ENST00000306726 EPN1Q9Y6I3 576 aaPredicted RBP16.35■□□□□ 0.21
PTPN9-201ENST00000306726 MYH3P11055 1940 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 DNAAF5Q86Y56 855 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 CNGA4Q8IV77 575 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 UBA5Q9GZZ9 404 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 MCM9Q9NXL9 1143 aa16.35■□□□□ 0.21
PTPN9-201ENST00000306726 PPP6R2O75170 966 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 SF3B3Q15393 1217 aaKnown RBP16.34■□□□□ 0.21
PTPN9-201ENST00000306726 SPATA1Q5VX52 437 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 IQUBQ8NA54 791 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 CDK5RAP3Q96JB5 506 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 NRXN2Q9P2S2 1712 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 ATP1A1P05023 1023 aaKnown RBP16.34■□□□□ 0.21
PTPN9-201ENST00000306726 ACTN2P35609 894 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 TMC4Q7Z404 712 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 CRACR2BQ8N4Y2 399 aaPredicted RBP16.34■□□□□ 0.21
PTPN9-201ENST00000306726 CSGALNACT2Q8N6G5 542 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 CCDC42Q96M95 316 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 TUBE1Q9UJT0 475 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 FBXO2Q9UK22 296 aaPredicted RBP16.34■□□□□ 0.21
PTPN9-201ENST00000306726 NCK2O43639 380 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 SERPINB2P05120 415 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 PTPREP23469 700 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 COPB1P53618 953 aaKnown RBP16.34■□□□□ 0.21
PTPN9-201ENST00000306726 LRRC41Q15345 812 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 MAATS1Q7Z4T9 603 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 MMS19Q96T76 1030 aa16.34■□□□□ 0.21
PTPN9-201ENST00000306726 SALL1Q9NSC2 1324 aa16.33■□□□□ 0.21
PTPN9-201ENST00000306726 CIAO1O76071 339 aa16.33■□□□□ 0.21
PTPN9-201ENST00000306726 CACNB1Q02641 598 aaPredicted RBP16.33■□□□□ 0.21
PTPN9-201ENST00000306726 DPYDQ12882 1025 aa16.33■□□□□ 0.21
PTPN9-201ENST00000306726 C2CD5Q86YS7 1000 aa16.33■□□□□ 0.21
PTPN9-201ENST00000306726 JAKMIP2Q96AA8 810 aa16.33■□□□□ 0.21
PTPN9-201ENST00000306726 SLC39A2Q9NP94 309 aa16.33■□□□□ 0.21
PTPN9-201ENST00000306726 TTC31Q49AM3 519 aaPredicted RBP16.33■□□□□ 0.2
PTPN9-201ENST00000306726 AFAP1L1Q8TED9 768 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 TTC26A0AVF1 554 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 MFAP3LO75121 409 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 GYPCP04921 128 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 STIM1Q13586 685 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 RASGRP2Q7LDG7 609 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 ENOX1Q8TC92 643 aaKnown RBP16.33■□□□□ 0.2
PTPN9-201ENST00000306726 MAP3K14Q99558 947 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 TRIM31Q9BZY9 425 aa16.33■□□□□ 0.2
PTPN9-201ENST00000306726 LRRIQ3A6PVS8 624 aaPredicted RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 FAM217BQ9NTX9 383 aaPredicted RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 AGPAT5Q9NUQ2 364 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 FMNL1O95466 1100 aaPredicted RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 GPR101Q96P66 508 aaPredicted RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 F8W031 263 aaPredicted RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 POLRMTO00411 1230 aaKnown RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 ZRANB2O95218 330 aaKnown RBP eCLIP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 POLD1P28340 1107 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 PDE6BP35913 854 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 ERVK-24P63145 666 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 PDE4DQ08499 809 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 KANK3Q6NY19 840 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 CYP26C1Q6V0L0 522 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 ADAT2Q7Z6V5 191 aaKnown RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 MED15Q96RN5 788 aa16.32■□□□□ 0.2
PTPN9-201ENST00000306726 SEPT11Q9NVA2 429 aaKnown RBP16.32■□□□□ 0.2
PTPN9-201ENST00000306726 CCDC151A5D8V7 595 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 GSG1L2A8MUP6 293 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 KLHL7Q8IXQ5 586 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 SAR1BQ9Y6B6 198 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 DDX60Q8IY21 1712 aaKnown RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 EPS15P42566 896 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 TXKP42681 527 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 PUM3Q15397 648 aaKnown RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 SH2D3CQ8N5H7 860 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 GJA10Q969M2 543 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 DYNLL2Q96FJ2 89 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 NOC4LQ9BVI4 516 aaKnown RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 MLXIPQ9HAP2 919 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 PACSIN2Q9UNF0 486 aaPredicted RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 PLEKP08567 350 aaPredicted RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 GGCXP38435 758 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 PRCPP42785 496 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 NOP2P46087 812 aaKnown RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 KIF5AQ12840 1032 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 PRPF4BQ13523 1007 aaKnown RBP16.31■□□□□ 0.2
PTPN9-201ENST00000306726 AMIGO3Q86WK7 504 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 MTFR1LQ9H019 292 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 ANKZF1Q9H8Y5 726 aa16.31■□□□□ 0.2
PTPN9-201ENST00000306726 GOLGA6CA6NDK9 693 aa16.3■□□□□ 0.2
PTPN9-201ENST00000306726 GOLGA6DP0CG33 693 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms