RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 RWDD2AQ9UIY3 292 aa22.66■■□□□ 1.22
VPS53-201ENST00000291074 SPDYE4A6NLX3 237 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 CCNT1O60563 726 aaKnown RBP22.65■■□□□ 1.22
VPS53-201ENST00000291074 CCDC93Q567U6 631 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 SEC63Q9UGP8 760 aaKnown RBP22.65■■□□□ 1.22
VPS53-201ENST00000291074 PHLPP2Q6ZVD8 1323 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 SOWAHDA6NJG2 315 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 AKR1B1P15121 316 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 DOK7Q18PE1 504 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 SP8Q8IXZ3 490 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 TRIM49BA6NDI0 452 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 CTAGE1Q96RT6 745 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 VPS16Q9H269 839 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 RMND1Q9NWS8 449 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 TMEM260Q9NX78 707 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 TAB2Q9NYJ8 693 aa22.65■■□□□ 1.22
VPS53-201ENST00000291074 BIN2Q9UBW5 565 aaPredicted RBP22.65■■□□□ 1.22
VPS53-201ENST00000291074 GOLGB1Q14789 3259 aaKnown RBP22.64■■□□□ 1.21
VPS53-201ENST00000291074 PDHBP11177 359 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 SCNN1DP51172 638 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 NONOQ15233 471 aaKnown RBP eCLIP22.64■■□□□ 1.21
VPS53-201ENST00000291074 TXNRD1Q16881 649 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 FILIP1LQ4L180 1135 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 JAKMIP3Q5VZ66 844 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 PPFIBP1Q86W92 1011 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 C6orf50Q9HD87 102 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 ATP6V0A2Q9Y487 856 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 CBX1P83916 185 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 DPP8Q6V1X1 898 aaPredicted RBP22.64■■□□□ 1.21
VPS53-201ENST00000291074 KRT25Q7Z3Z0 450 aa22.64■■□□□ 1.21
VPS53-201ENST00000291074 TTF2Q9UNY4 1162 aaKnown RBP22.64■■□□□ 1.21
VPS53-201ENST00000291074 SLURP2P0DP57 97 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 NOVP48745 357 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 CCDC12Q8WUD4 166 aaPredicted RBP22.63■■□□□ 1.21
VPS53-201ENST00000291074 CCSER1Q9C0I3 900 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 MTMR4Q9NYA4 1195 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 CGNQ9P2M7 1197 aaKnown RBP22.63■■□□□ 1.21
VPS53-201ENST00000291074 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.63■■□□□ 1.214e-6■■■□□ 17.1
VPS53-201ENST00000291074 OR52Z1P0C646 297 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 CASP14P31944 242 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 GABPAQ06546 454 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 KMT5BQ4FZB7 885 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 SOGA3Q5TF21 947 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 KRT27Q7Z3Y8 459 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 COA1Q9GZY4 146 aa22.63■■□□□ 1.21
VPS53-201ENST00000291074 N4BP3O15049 544 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 KLRC4O43908 158 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 TUBB4AP04350 444 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 GYPCP04921 128 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 FXR1P51114 621 aaKnown RBP eCLIP22.62■■□□□ 1.21
VPS53-201ENST00000291074 PMS1P54277 932 aaKnown RBP22.62■■□□□ 1.21
VPS53-201ENST00000291074 TBCKQ8TEA7 893 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 PANX2Q96RD6 677 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 WDR24Q96S15 920 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 LIMA1Q9UHB6 759 aaKnown RBP22.62■■□□□ 1.21
VPS53-201ENST00000291074 KCNJ18B7U540 433 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 PLCG1P19174 1290 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 GNA11P29992 359 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 PRPHP41219 470 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 KCNJ12Q14500 433 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 ERCC6LQ2NKX8 1250 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 RAD9BQ6WBX8 426 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 NEK8Q86SG6 692 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 COA7Q96BR5 231 aa22.62■■□□□ 1.21
VPS53-201ENST00000291074 MRPL44Q9H9J2 332 aaKnown RBP22.62■■□□□ 1.21
VPS53-201ENST00000291074 LAD1O00515 517 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 MFAP3LO75121 409 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 URI1O94763 535 aaPredicted RBP22.61■■□□□ 1.21
VPS53-201ENST00000291074 COPB1P53618 953 aaKnown RBP22.61■■□□□ 1.21
VPS53-201ENST00000291074 CABP7Q86V35 215 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 ZC3H12CQ9C0D7 883 aaKnown RBP22.61■■□□□ 1.21
VPS53-201ENST00000291074 GPCPD1Q9NPB8 672 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 A0A0U1RQJ8 604 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 TCP11X2Q5H9J9 407 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 ADSSL1Q8N142 457 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 ATRIPQ8WXE1 791 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 RIOX1Q9H6W3 641 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 KBTBD4Q9NVX7 518 aa22.61■■□□□ 1.21
VPS53-201ENST00000291074 PLIN4Q96Q06 1357 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 TECP42680 631 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 GNG11P61952 73 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 POTEDQ86YR6 584 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 REXO1Q8N1G1 1221 aaKnown RBP22.6■■□□□ 1.21
VPS53-201ENST00000291074 USP40Q9NVE5 1235 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 SRGNP10124 158 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 PARP3Q9Y6F1 533 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 QSER1Q2KHR3 1735 aa22.6■■□□□ 1.21
VPS53-201ENST00000291074 RNF225M0QZC1 329 aaPredicted RBP22.59■■□□□ 1.21
VPS53-201ENST00000291074 FBXO38Q6PIJ6 1188 aa22.59■■□□□ 1.21
VPS53-201ENST00000291074 IRF2BP1Q8IU81 584 aa22.59■■□□□ 1.21
VPS53-201ENST00000291074 COL11A2P13942 1736 aaPredicted RBP22.59■■□□□ 1.21
VPS53-201ENST00000291074 TMC4Q7Z404 712 aa22.59■■□□□ 1.21
VPS53-201ENST00000291074 IRX2Q9BZI1 471 aaPredicted RBP22.59■■□□□ 1.21
VPS53-201ENST00000291074 LRRC10BA6NIK2 292 aa22.58■■□□□ 1.21
VPS53-201ENST00000291074 PRDM4Q9UKN5 801 aa22.58■■□□□ 1.21
VPS53-201ENST00000291074 SMARCA1P28370 1054 aa22.58■■□□□ 1.2
VPS53-201ENST00000291074 ZNF397Q8NF99 534 aaPredicted RBP22.58■■□□□ 1.2
VPS53-201ENST00000291074 SERPINB13Q9UIV8 391 aa22.58■■□□□ 1.2
VPS53-201ENST00000291074 IGKV6D-41A0A0C4DH26 115 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 SPAG1Q07617 926 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms