RNA–Protein interactions for RNA: ENST00000270061.11

SSBP4-201, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP4, Length 1,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-201ENST00000270061 APOA5Q6Q788 366 aa28.53■■■□□ 2.16
SSBP4-201ENST00000270061 FOXD4L4Q8WXT5 416 aaPredicted RBP28.53■■■□□ 2.16
SSBP4-201ENST00000270061 NCOA5Q9HCD5 579 aaKnown RBP28.53■■■□□ 2.16
SSBP4-201ENST00000270061 KIF3AQ9Y496 699 aa28.53■■■□□ 2.16
SSBP4-201ENST00000270061 TTLL1O95922 423 aa28.52■■■□□ 2.16
SSBP4-201ENST00000270061 EN2P19622 333 aaPredicted RBP28.52■■■□□ 2.16
SSBP4-201ENST00000270061 PLEKHH3Q7Z736 793 aa28.52■■■□□ 2.16
SSBP4-201ENST00000270061 MB21D1Q8N884 522 aa28.52■■■□□ 2.16
SSBP4-201ENST00000270061 ATP6V1DQ9Y5K8 247 aa28.52■■■□□ 2.16
SSBP4-201ENST00000270061 PTPDC1A2A3K4 754 aa28.52■■■□□ 2.16
SSBP4-201ENST00000270061 MCTP1Q6DN14 999 aa28.52■■■□□ 2.16
SSBP4-201ENST00000270061 SAMD1Q6SPF0 538 aaPredicted RBP28.52■■■□□ 2.16
SSBP4-201ENST00000270061 ERICH2A1L162 156 aa28.51■■■□□ 2.15
SSBP4-201ENST00000270061 F5H6K3 240 aa28.51■■■□□ 2.15
SSBP4-201ENST00000270061 INHAP05111 366 aa28.51■■■□□ 2.15
SSBP4-201ENST00000270061 KLRC3Q07444 240 aa28.51■■■□□ 2.15
SSBP4-201ENST00000270061 SKOR2Q2VWA4 1001 aaPredicted RBP28.51■■■□□ 2.15
SSBP4-201ENST00000270061 WDR78Q5VTH9 848 aa28.51■■■□□ 2.15
SSBP4-201ENST00000270061 MKL1Q969V6 931 aa28.51■■■□□ 2.15
SSBP4-201ENST00000270061 NID2Q14112 1375 aa28.51■■■□□ 2.15
SSBP4-201ENST00000270061 TSPY2A6NKD2 308 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 TRAK2O60296 914 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 DTNBO60941 627 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 CCL5P13501 91 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 RCAN1P53805 252 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 WTAPQ15007 396 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 FAM83BQ5T0W9 1011 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 FAM184AQ8NB25 1140 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 ATG4CQ96DT6 458 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 RNF208Q9H0X6 261 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 SENP2Q9HC62 589 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 CYP2B6P20813 491 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 NFXL1Q6ZNB6 911 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 SYNPO2Q9UMS6 1093 aa28.5■■■□□ 2.15
SSBP4-201ENST00000270061 CCDC69A6NI79 296 aa28.49■■■□□ 2.15
SSBP4-201ENST00000270061 ZBTB43O43298 467 aa28.49■■■□□ 2.15
SSBP4-201ENST00000270061 SEC23AQ15436 765 aa28.49■■■□□ 2.15
SSBP4-201ENST00000270061 UBAC1Q9BSL1 405 aa28.49■■■□□ 2.15
SSBP4-201ENST00000270061 SPATC1LQ9H0A9 340 aa28.49■■■□□ 2.15
SSBP4-201ENST00000270061 FBXO28Q9NVF7 368 aa28.49■■■□□ 2.15
SSBP4-201ENST00000270061 RANBP6O60518 1105 aaKnown RBP28.48■■■□□ 2.15
SSBP4-201ENST00000270061 NDUFB10O96000 172 aa28.48■■■□□ 2.15
SSBP4-201ENST00000270061 METAP2P50579 478 aaKnown RBP eCLIP28.48■■■□□ 2.157e-7■■■□□ 17.5
SSBP4-201ENST00000270061 MORN1Q5T089 497 aa28.48■■■□□ 2.15
SSBP4-201ENST00000270061 DDX11Q96FC9 970 aa28.48■■■□□ 2.15
SSBP4-201ENST00000270061 SLC12A7Q9Y666 1083 aa28.48■■■□□ 2.15
SSBP4-201ENST00000270061 IVNS1ABPQ9Y6Y0 642 aa28.48■■■□□ 2.15
SSBP4-201ENST00000270061 VPS37CA5D8V6 355 aaPredicted RBP28.47■■■□□ 2.15
SSBP4-201ENST00000270061 HMGCRP04035 888 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 XRCC5P13010 732 aaKnown RBP28.47■■■□□ 2.15
SSBP4-201ENST00000270061 RGS2P41220 211 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 PLS1Q14651 629 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 PPP4R3BQ5MIZ7 849 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 IQCA1Q86XH1 822 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 LRRC47Q8N1G4 583 aaKnown RBP28.47■■■□□ 2.15
SSBP4-201ENST00000270061 NUP88Q99567 741 aaPredicted RBP28.47■■■□□ 2.15
SSBP4-201ENST00000270061 MOV10L1Q9BXT6 1211 aaKnown RBP28.47■■■□□ 2.15
SSBP4-201ENST00000270061 LMBRD1Q9NUN5 540 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 SYNE3Q6ZMZ3 975 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 USP6NLQ92738 828 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 ZSCAN10Q96SZ4 725 aaPredicted RBP28.47■■■□□ 2.15
SSBP4-201ENST00000270061 UNC93B1Q9H1C4 597 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 PPP1R9AQ9ULJ8 1098 aa28.47■■■□□ 2.15
SSBP4-201ENST00000270061 ZNFX1Q9P2E3 1918 aaKnown RBP28.46■■■□□ 2.15
SSBP4-201ENST00000270061 GJB1P08034 283 aa28.46■■■□□ 2.15
SSBP4-201ENST00000270061 RGS22Q8NE09 1264 aa28.46■■■□□ 2.15
SSBP4-201ENST00000270061 GMCL1P1Q8NEA9 526 aa28.46■■■□□ 2.15
SSBP4-201ENST00000270061 ZKSCAN3Q9BRR0 538 aa28.46■■■□□ 2.15
SSBP4-201ENST00000270061 ADAMTS5Q9UNA0 930 aa28.46■■■□□ 2.15
SSBP4-201ENST00000270061 STX8Q9UNK0 236 aa28.46■■■□□ 2.15
SSBP4-201ENST00000270061 CPLX1O14810 134 aa28.45■■■□□ 2.15
SSBP4-201ENST00000270061 PTPREP23469 700 aa28.45■■■□□ 2.15
SSBP4-201ENST00000270061 TRIB2Q92519 343 aa28.45■■■□□ 2.15
SSBP4-201ENST00000270061 TNKSO95271 1327 aa28.45■■■□□ 2.14
SSBP4-201ENST00000270061 CDKL5O76039 1030 aa28.45■■■□□ 2.14
SSBP4-201ENST00000270061 FDPSP14324 419 aaKnown RBP28.45■■■□□ 2.14
SSBP4-201ENST00000270061 MAP2K5Q13163 448 aa28.45■■■□□ 2.14
SSBP4-201ENST00000270061 SHCBP1Q8NEM2 672 aa28.45■■■□□ 2.14
SSBP4-201ENST00000270061 SLC15A5A6NIM6 579 aa28.44■■■□□ 2.14
SSBP4-201ENST00000270061 CPLX2Q6PUV4 134 aaKnown RBP28.44■■■□□ 2.14
SSBP4-201ENST00000270061 TRMT44Q8IYL2 757 aaKnown RBP28.44■■■□□ 2.14
SSBP4-201ENST00000270061 APBA2Q99767 749 aa28.44■■■□□ 2.14
SSBP4-201ENST00000270061 SLF1Q9BQI6 1058 aa28.44■■■□□ 2.14
SSBP4-201ENST00000270061 IL17RBQ9NRM6 502 aa28.44■■■□□ 2.14
SSBP4-201ENST00000270061 VWA5AO00534 786 aa28.43■■■□□ 2.14
SSBP4-201ENST00000270061 ERCC3P19447 782 aa28.43■■■□□ 2.14
SSBP4-201ENST00000270061 GJA8P48165 433 aa28.43■■■□□ 2.14
SSBP4-201ENST00000270061 TMEM132BQ14DG7 1078 aa28.43■■■□□ 2.14
SSBP4-201ENST00000270061 ENAHQ8N8S7 591 aaPredicted RBP28.43■■■□□ 2.14
SSBP4-201ENST00000270061 FAM217BQ9NTX9 383 aaPredicted RBP28.43■■■□□ 2.14
SSBP4-201ENST00000270061 GOLGA8AA7E2F4 631 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 NMT2O60551 498 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 GRB14Q14449 540 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 PPP2R5BQ15173 497 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 SLFN13Q68D06 897 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 MICU3Q86XE3 530 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 MROH8Q9H579 483 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 STRNO43815 780 aa28.42■■■□□ 2.14
SSBP4-201ENST00000270061 ADD1P35611 737 aaKnown RBP28.42■■■□□ 2.14
SSBP4-201ENST00000270061 NCAPG2Q86XI2 1143 aa28.42■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms