RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PNOCQ13519 176 aa18.83■□□□□ 0.61
USP4-201ENST00000265560 IL17AQ16552 155 aa18.83■□□□□ 0.61
USP4-201ENST00000265560 TMEM60Q9H2L4 133 aa18.83■□□□□ 0.61
USP4-201ENST00000265560 RNF181Q9P0P0 153 aa18.83■□□□□ 0.61
USP4-201ENST00000265560 USP25Q9UHP3 1055 aa18.83■□□□□ 0.61
USP4-201ENST00000265560 LTBP3Q9NS15 1303 aa18.83■□□□□ 0.61
USP4-201ENST00000265560 H7C1D1 291 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 LMNB1P20700 586 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 ZRSR1Q15695 479 aaKnown RBP18.83■□□□□ 0.6
USP4-201ENST00000265560 FAM83BQ5T0W9 1011 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 C6orf50Q9HD87 102 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 PNMA6FA0A0J9YX94 578 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L15C9J2P7 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L13C9JLJ4 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L11C9JVI0 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L18D6R9N7 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L22D6RA61 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L17D6RBQ6 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L19D6RCP7 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L20D6RJB6 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 INPP5BP32019 993 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 CAP2P40123 477 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L24Q0WX57 530 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 USP17L6PQ6QN14 398 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 STAMQ92783 540 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 FBXO28Q9NVF7 368 aa18.83■□□□□ 0.6
USP4-201ENST00000265560 SRPRBQ9Y5M8 271 aaKnown RBP18.83■□□□□ 0.6
USP4-201ENST00000265560 A0A087X0B3 334 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 RPS12P25398 132 aaKnown RBP18.82■□□□□ 0.6
USP4-201ENST00000265560 HIRAP54198 1017 aaPredicted RBP18.82■□□□□ 0.6
USP4-201ENST00000265560 CDC37Q16543 378 aaPredicted RBP18.82■□□□□ 0.6
USP4-201ENST00000265560 C11orf57Q6ZUT1 292 aaPredicted RBP18.82■□□□□ 0.6
USP4-201ENST00000265560 DPF2Q92785 391 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 ZBTB5O15062 677 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 BMP3P12645 472 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 CASP1P29466 404 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 TNNI2P48788 182 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 TBCKQ8TEA7 893 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 CEP131Q9UPN4 1083 aa18.82■□□□□ 0.6
USP4-201ENST00000265560 CCNT1O60563 726 aaKnown RBP18.81■□□□□ 0.6
USP4-201ENST00000265560 FKBP1CQ5VVH2 108 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 REXO1Q8N1G1 1221 aaKnown RBP18.81■□□□□ 0.6
USP4-201ENST00000265560 HPSEQ9Y251 543 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 PCDHA1Q9Y5I3 950 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 PP2D1A8MPX8 630 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 RBM43Q6ZSC3 357 aaKnown RBP18.81■□□□□ 0.6
USP4-201ENST00000265560 SYMPKQ92797 1274 aaKnown RBP18.81■□□□□ 0.6
USP4-201ENST00000265560 ZKSCAN4Q969J2 545 aaPredicted RBP18.81■□□□□ 0.6
USP4-201ENST00000265560 GJA10Q969M2 543 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 PLIN2Q99541 437 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 GGA3Q9NZ52 723 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 SERTAD1Q9UHV2 236 aa18.81■□□□□ 0.6
USP4-201ENST00000265560 KIFC2Q96AC6 838 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 DHX58Q96C10 678 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 GNA11P29992 359 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 CNNM3Q8NE01 707 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 ZNF341Q9BYN7 854 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 ARHGEF10LQ9HCE6 1279 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 GPRC5DQ9NZD1 345 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 ADCY7P51828 1080 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 FEZ1Q99689 392 aa18.8■□□□□ 0.6
USP4-201ENST00000265560 ARFGEF1Q9Y6D6 1849 aa18.79■□□□□ 0.6
USP4-201ENST00000265560 PHF20L1A8MW92 1017 aa18.79■□□□□ 0.6
USP4-201ENST00000265560 CCDC174Q6PII3 467 aa18.79■□□□□ 0.6
USP4-201ENST00000265560 CCDC12Q8WUD4 166 aaPredicted RBP18.79■□□□□ 0.6
USP4-201ENST00000265560 DCAF4Q8WV16 495 aa18.79■□□□□ 0.6
USP4-201ENST00000265560 ANP32BQ92688 251 aaKnown RBP18.79■□□□□ 0.6
USP4-201ENST00000265560 CBX8Q9HC52 389 aa18.79■□□□□ 0.6
USP4-201ENST00000265560 AP5Z1O43299 807 aa18.79■□□□□ 0.6
USP4-201ENST00000265560 SMARCA1P28370 1054 aa18.79■□□□□ 0.6
USP4-201ENST00000265560 PRR29P0C7W0 189 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 AFMP43652 599 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 ZNF165P49910 485 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 ATP2C1P98194 919 aaPredicted RBP18.78■□□□□ 0.6
USP4-201ENST00000265560 NONOQ15233 471 aaKnown RBP eCLIP18.78■□□□□ 0.6
USP4-201ENST00000265560 PSTPIP2Q9H939 334 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 FAM13BQ9NYF5 915 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 KIAA1468Q9P260 1216 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 TNFAIP1Q13829 316 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 DPCR1Q3MIW9 517 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 SYDE2Q5VT97 1194 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 PRR12Q9ULL5 1215 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 TMX2Q9Y320 296 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 C4orf32Q8N8J7 132 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 GMCL1P1Q8NEA9 526 aa18.78■□□□□ 0.6
USP4-201ENST00000265560 HOXA13P31271 388 aaPredicted RBP18.77■□□□□ 0.6
USP4-201ENST00000265560 DAGLBQ8NCG7 672 aa18.77■□□□□ 0.6
USP4-201ENST00000265560 TDP2O95551 362 aa18.77■□□□□ 0.6
USP4-201ENST00000265560 KRBA2Q6ZNG9 492 aa18.77■□□□□ 0.6
USP4-201ENST00000265560 GPC2Q8N158 579 aa18.77■□□□□ 0.6
USP4-201ENST00000265560 RTN4Q9NQC3 1192 aaKnown RBP18.77■□□□□ 0.6
USP4-201ENST00000265560 C9orf131Q5VYM1 1079 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 SBF1O95248 1867 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 EDIL3O43854 480 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 TBC1D12O60347 775 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 ASNSP08243 561 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 PPP4R3BQ5MIZ7 849 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 POTEDQ86YR6 584 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 TBC1D5Q92609 795 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 GMCL1Q96IK5 515 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms