RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 KIAA1024Q9UPX6 916 aa20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 KIAA0232Q92628 1395 aa20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 ARMCX5Q6P1M9 558 aa20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 CAPN9O14815 690 aa20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 RPN1P04843 607 aaKnown RBP20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 OAS2P29728 719 aaKnown RBP20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 FAM196AQ6ZSG2 479 aa20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 ARMCX3Q9UH62 379 aaPredicted RBP20.57■□□□□ 0.88
SMARCC1-201ENST00000254480 CYP2D7A0A087X1C5 515 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 POLGP54098 1239 aaPredicted RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 LRRC41Q15345 812 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 C4orf50Q6ZRC1 276 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 GRAMD1CQ8IYS0 662 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 MRPL11Q9Y3B7 192 aaKnown RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 TNFAIP1Q13829 316 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 PPP1R12CQ9BZL4 782 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 QTRT2Q9H974 415 aaKnown RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 SHANK2Q9UPX8 1470 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 TUBBP07437 444 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 PAK2Q13177 524 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 PABPC4Q13310 644 aaKnown RBP eCLIP20.56■□□□□ 0.881e-8■■■□□ 17.3
SMARCC1-201ENST00000254480 ADAM9Q13443 819 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 BIRC2Q13490 618 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 DNMT1P26358 1616 aaKnown RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 PPEF1O14829 653 aaPredicted RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 CDC25AP30304 524 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 CSRNP1Q96S65 589 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 SAR1BQ9Y6B6 198 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 SPDYE16A6NNV3 312 aaPredicted RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 SPDYE2Q495Y8 402 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 PNMA8AQ86V59 439 aaPredicted RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 RPUSD2Q8IZ73 545 aaKnown RBP20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 GPT2Q8TD30 523 aa20.56■□□□□ 0.88
SMARCC1-201ENST00000254480 SNAP25P60880 206 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 DCPSQ96C86 337 aaKnown RBP20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 TEKT3Q9BXF9 490 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 DENND2CQ68D51 928 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 PPFIBP2Q8ND30 876 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 OR8K1Q8NGG5 319 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 KRIT1O00522 736 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 RILPQ96NA2 401 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 MED23Q9ULK4 1368 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 RFX1P22670 979 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 EEPD1Q7L9B9 569 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 UBN2Q6ZU65 1347 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 MEIS1O00470 390 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 ATP11AP98196 1134 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 ZBTB8OSQ8IWT0 167 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 MCUR1Q96AQ8 359 aa20.55■□□□□ 0.88
SMARCC1-201ENST00000254480 SULF1Q8IWU6 871 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 SEPT9Q9UHD8 586 aaPredicted RBP20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 PALM2Q8IXS6 379 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 BUB1BO60566 1050 aaPredicted RBP20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 NOL3O60936 208 aaKnown RBP20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 RAD17O75943 681 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 ADCY8P40145 1251 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 MIGA2Q7L4E1 593 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 CFAP43Q8NDM7 1665 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 POMGNT1Q8WZA1 660 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 C1orf112Q9NSG2 853 aa20.54■□□□□ 0.88
SMARCC1-201ENST00000254480 STAM2O75886 525 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 P4HA1P13674 534 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 MAGED2Q9UNF1 606 aaPredicted RBP20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 TAOK1Q7L7X3 1001 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 PHLDB2Q86SQ0 1253 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 TACC3Q9Y6A5 838 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 DPY19L2Q6NUT2 758 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 GSDMBQ8TAX9 411 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 DYNLL2Q96FJ2 89 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 LSG1Q9H089 658 aaKnown RBP20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 RAB20Q9NX57 234 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 SWAP70Q9UH65 585 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 ATP1A2P50993 1020 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 SLC12A2P55011 1212 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 KRT12Q99456 494 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 SPC25Q9HBM1 224 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 MKRN1Q9UHC7 482 aaKnown RBP20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 TNNC2P02585 160 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 ERCC6LQ2NKX8 1250 aa20.53■□□□□ 0.88
SMARCC1-201ENST00000254480 PCK1P35558 622 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 DMP1Q13316 513 aaPredicted RBP20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 GBP6Q6ZN66 633 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 COA7Q96BR5 231 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 STK38LQ9Y2H1 464 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 TRIM50Q86XT4 487 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 SLFN12Q8IYM2 578 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 GNA14O95837 355 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 TMOD1P28289 359 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 CTNNA1P35221 906 aaKnown RBP20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 ODR4Q5SWX8 454 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 PTPN22Q9Y2R2 807 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 I3L4J1 428 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 TMEM191BP0C7N4 346 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 NME8Q8N427 588 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 CABS1Q96KC9 395 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 CFAP57Q96MR6 1250 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 DISC1Q9NRI5 854 aa20.52■□□□□ 0.88
SMARCC1-201ENST00000254480 CYP21A2P08686 494 aa20.52■□□□□ 0.87
SMARCC1-201ENST00000254480 PIK3CAP42336 1068 aa20.52■□□□□ 0.87
SMARCC1-201ENST00000254480 PCIF1Q9H4Z3 704 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms