RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 CDKL5O76039 1030 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 COPB2P35606 906 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 CCT2P78371 535 aaKnown RBP16.36■□□□□ 0.21
VPS25-201ENST00000253794 STK3Q13188 491 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 CDC37Q16543 378 aaPredicted RBP16.36■□□□□ 0.21
VPS25-201ENST00000253794 CPLX2Q6PUV4 134 aaKnown RBP16.36■□□□□ 0.21
VPS25-201ENST00000253794 NOL8Q76FK4 1167 aaKnown RBP16.36■□□□□ 0.21
VPS25-201ENST00000253794 RIOX2Q8IUF8 465 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 GPRC5AQ8NFJ5 357 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 BEGAINQ9BUH8 593 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 MAF1Q9H063 256 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 SPATC1LQ9H0A9 340 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 STK36Q9NRP7 1315 aa16.36■□□□□ 0.21
VPS25-201ENST00000253794 PRPF3O43395 683 aaKnown RBP16.35■□□□□ 0.21
VPS25-201ENST00000253794 CTDNEP1O95476 244 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 STAT3P40763 770 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 TRAF1Q13077 416 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 QRICH1Q2TAL8 776 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 TKFCQ3LXA3 575 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 CMTR1Q8N1G2 835 aaKnown RBP16.35■□□□□ 0.21
VPS25-201ENST00000253794 ANKRD13CQ8N6S4 541 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 RRP36Q96EU6 259 aaKnown RBP16.35■□□□□ 0.21
VPS25-201ENST00000253794 PIGSQ96S52 555 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 LLPHQ9BRT6 129 aaKnown RBP16.35■□□□□ 0.21
VPS25-201ENST00000253794 CPA4Q9UI42 421 aa16.35■□□□□ 0.21
VPS25-201ENST00000253794 COL11A1P12107 1806 aaPredicted RBP16.35■□□□□ 0.21
VPS25-201ENST00000253794 hCG_1984214I3L0E3 225 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 CPLX1O14810 134 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 FMNL1O95466 1100 aaPredicted RBP16.34■□□□□ 0.21
VPS25-201ENST00000253794 TBC1D8O95759 1140 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 SLC25A27O95847 323 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 CCNA1P78396 465 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 CUL4AQ13619 759 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 Q3C1V9 767 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 ZNF713Q8N859 430 aaPredicted RBP16.34■□□□□ 0.21
VPS25-201ENST00000253794 NECAB1Q8N987 351 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 NSUN7Q8NE18 718 aaKnown RBP16.34■□□□□ 0.21
VPS25-201ENST00000253794 SMARCC2Q8TAQ2 1214 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 PAGR1Q9BTK6 254 aa16.34■□□□□ 0.21
VPS25-201ENST00000253794 MOV10L1Q9BXT6 1211 aaKnown RBP16.34■□□□□ 0.21
VPS25-201ENST00000253794 K7ELQ4 463 aaPredicted RBP16.33■□□□□ 0.2
VPS25-201ENST00000253794 GPR25O00155 361 aa16.33■□□□□ 0.2
VPS25-201ENST00000253794 PPP1R11O60927 126 aaPredicted RBP16.33■□□□□ 0.2
VPS25-201ENST00000253794 SNRNP48Q6IEG0 339 aaKnown RBP16.33■□□□□ 0.2
VPS25-201ENST00000253794 FBXO11Q86XK2 927 aa16.33■□□□□ 0.2
VPS25-201ENST00000253794 TEX2Q8IWB9 1127 aa16.33■□□□□ 0.2
VPS25-201ENST00000253794 FAM177A1Q8N128 213 aaPredicted RBP16.33■□□□□ 0.2
VPS25-201ENST00000253794 AMNQ9BXJ7 453 aa16.33■□□□□ 0.2
VPS25-201ENST00000253794 MROH8Q9H579 483 aa16.33■□□□□ 0.2
VPS25-201ENST00000253794 RAVER2Q9HCJ3 691 aaKnown RBP16.33■□□□□ 0.2
VPS25-201ENST00000253794 VAT1LQ9HCJ6 419 aa16.33■□□□□ 0.2
VPS25-201ENST00000253794 CTDP1Q9Y5B0 961 aaPredicted RBP16.33■□□□□ 0.2
VPS25-201ENST00000253794 PEX10O60683 326 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 ABCB11O95342 1321 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 DEXIO95424 95 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 MAPK4P31152 587 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 SNAP25P60880 206 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 LACTBP83111 547 aaPredicted RBP16.32■□□□□ 0.2
VPS25-201ENST00000253794 SP3Q02447 781 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 GHRHRQ02643 423 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 PKN1Q16512 942 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 PFKFB3Q16875 520 aaPredicted RBP16.32■□□□□ 0.2
VPS25-201ENST00000253794 CCDC174Q6PII3 467 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 SAMD1Q6SPF0 538 aaPredicted RBP16.32■□□□□ 0.2
VPS25-201ENST00000253794 CCDC83Q8IWF9 413 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 TRIM22Q8IYM9 498 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 CCDC82Q8N4S0 544 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 CHST13Q8NET6 341 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 PHKBQ93100 1093 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 AGBL1Q96MI9 1066 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 SEC63Q9UGP8 760 aaKnown RBP16.32■□□□□ 0.2
VPS25-201ENST00000253794 FBXO40Q9UH90 709 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 CCPG1Q9ULG6 757 aa16.32■□□□□ 0.2
VPS25-201ENST00000253794 V9GY48 417 aaPredicted RBP16.32■□□□□ 0.2
VPS25-201ENST00000253794 SSRP1Q08945 709 aaKnown RBP16.31■□□□□ 0.2
VPS25-201ENST00000253794 PPP1R18Q6NYC8 613 aa16.31■□□□□ 0.2
VPS25-201ENST00000253794 HOMER1Q86YM7 354 aa16.31■□□□□ 0.2
VPS25-201ENST00000253794 CPXCR1Q8N123 301 aa16.31■□□□□ 0.2
VPS25-201ENST00000253794 RGS22Q8NE09 1264 aa16.31■□□□□ 0.2
VPS25-201ENST00000253794 SLC26A6Q9BXS9 759 aa16.31■□□□□ 0.2
VPS25-201ENST00000253794 PORCNQ9H237 461 aa16.31■□□□□ 0.2
VPS25-201ENST00000253794 RIPK3Q9Y572 518 aa16.31■□□□□ 0.2
VPS25-201ENST00000253794 BAZ2BQ9UIF8 2168 aaKnown RBP16.3■□□□□ 0.2
VPS25-201ENST00000253794 PTPDC1A2A3K4 754 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 FKTNO75072 461 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 SCG2P13521 617 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 FDPSP14324 419 aaKnown RBP16.3■□□□□ 0.2
VPS25-201ENST00000253794 ERCC3P19447 782 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 HMGN5P82970 282 aaKnown RBP16.3■□□□□ 0.2
VPS25-201ENST00000253794 HSCBQ8IWL3 235 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 ABRAQ8N0Z2 381 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 CLEC4DQ8WXI8 215 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 INTS4Q96HW7 963 aaKnown RBP16.3■□□□□ 0.2
VPS25-201ENST00000253794 BARHL2Q9NY43 387 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 PCDHA1Q9Y5I3 950 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 ZNF236Q9UL36 1845 aa16.3■□□□□ 0.2
VPS25-201ENST00000253794 STRNO43815 780 aa16.29■□□□□ 0.2
VPS25-201ENST00000253794 HSPA1AP0DMV8 641 aaKnown RBP16.29■□□□□ 0.2
VPS25-201ENST00000253794 HSPA1BP0DMV9 641 aaKnown RBP16.29■□□□□ 0.2
VPS25-201ENST00000253794 HSPA8P11142 646 aaKnown RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms